nMoldyn: A program package for a neutron scattering oriented analysis of molecular dynamics simulations. - Tomasz Róg; Krzysztof Murzyn; Konrad Hinsen; Gerald R. Kneller (J. Comput. Chem., 2003)

Interactions of Magainin-2 Amide with Membrane Lipids. - Krzysztof Murzyn; Tomasz Róg; Marta Pasenkiewicz-Gierula (International Conference on Computational Science, 2004)

How Anacetrapib Inhibits the Activity of the Cholesteryl Ester Transfer Protein? Perspective through Atomistic Simulations. - Tarja Äijänen; Artturi Koivuniemi; Matti Javanainen; Sami Rissanen; Tomasz Róg; Ilpo Vattulainen (PLoS Comput. Biol., 2014)

doGlycans-Tools for Preparing Carbohydrate Structures for Atomistic Simulations of Glycoproteins, Glycolipids, and Carbohydrate Polymers for GROMACS. - Reinis Danne; Chetan S. Poojari; Hector Martinez-Seara; Sami Rissanen; Fabio Lolicato; Tomasz Róg; Ilpo Vattulainen (J. Chem. Inf. Model., 2017)

Rigorous Computational Study Reveals What Docking Overlooks: Double Trouble from Membrane Association in Protein Kinase C Modulators. - Saara Lautala; Riccardo Provenzani; Artturi Koivuniemi; Waldemar Kulig; Virpi Talman; Tomasz Róg; Raimo K. Tuominen; Jari Yli-Kauhaluoma; Alex Bunker (J. Chem. Inf. Model., 2020)