L1Base: from functional annotation to prediction of active LINE-1 elements. - Tobias Penzkofer; Thomas Dandekar; Tomasz Zemojtel (Nucleic Acids Res., 2005)

Systems-Level Evidence of Transcriptional Co-Regulation of Yeast Protein Complexes. - J. William Lee; Tomasz Zemojtel; Eugene I. Shakhnovich (J. Comput. Biol., 2009)

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. - Ruping Sun; Michael I. Love; Tomasz Zemojtel; Anne-Katrin Emde; Ho-Ryun Chung; Martin Vingron; Stefan A. Haas (Bioinform., 2012)

Walking the interactome for candidate prioritization in exome sequencing studies of Mendelian diseases. - Damian Smedley; Sebastian Köhler 001; Johanna Christina Czeschik; Joanna S. Amberger; Carol A. Bocchini; Ada Hamosh; Julian Veldboer; Tomasz Zemojtel; Peter N. Robinson (Bioinform., 2014)

The Human Phenotype Ontology in 2017. - Sebastian Köhler 001; Nicole A. Vasilevsky; Mark Engelstad; Erin Foster; Julie A. McMurry; Ségolène Aymé; Gareth Baynam; Susan M. Bello; Cornelius F. Boerkoel; Kym M. Boycott; Michael Brudno; Orion J. Buske; et al. (Nucleic Acids Res., 2017)

L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes. - Tobias Penzkofer; Marten Jäger; Marek Figlerowicz; Richard Badge; Stefan Mundlos; Peter N. Robinson; Tomasz Zemojtel (Nucleic Acids Res., 2017)