Automated robust generation of compact 3D statistical shape models. - Tomaz Vrtovec; Bostjan Likar; Dejan Tomazevic; Franjo Pernus (Image Processing, 2004)

Curved planar reformation of CT spine data. - Tomaz Vrtovec; Bostjan Likar; Franjo Pernus (Image Processing, 2005)

Generation of Curved Planar Reformations from Magnetic Resonance Images of the Spine. - Tomaz Vrtovec; Sébastien Ourselin; Lavier Gomes; Bostjan Likar; Franjo Pernus (MICCAI (2), 2006)

Determination of 3D location and rotation of lumbar vertebrae in CT images by symmetry-based auto-registration. - Tomaz Vrtovec; Bostjan Likar; Franjo Pernus (Image Processing, 2007)

Modality-Independent Determination of Vertebral Position and Rotation in 3D. - Tomaz Vrtovec (MIAR, 2008)

A Symmetry-Based Method for the Determination of Vertebral Rotation in 3D. - Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (MICCAI (1), 2008)

Automated determination of spinal centerline in CT and MR images. - Darko Stern; Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (Image Processing, 2009)

Automated Tracking of Vesicles in Phase Contrast Microscopy Images. - Peter Usenik; Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (ICPR, 2010)

Evaluation of sagittal vertebral rotation in ct images by manual and automated methods. - Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (ISBI, 2010)

Segmentation of Vertebral Bodies in MR Images Based on Geometrical Models in 3D. - Darko Stern; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (MIAR, 2010)

Automated determination of the centers of vertebral bodies and intervertebral discs in CT and MR lumbar spine images. - Darko Stern; Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (Image Processing, 2010)

Evaluation of manual and computerized methods for the determination of axial vertebral rotation. - Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (Image Processing, 2010)

Automated classification and visualization of healthy and pathological dental tissues based on near-infrared hyper-spectral imaging. - Peter Usenik; Miran Bürmen; Tomaz Vrtovec; Ales Fidler; Franjo Pernus; Bostjan Likar (Computer-Aided Diagnosis, 2011)

Segmentation of vertebral bodies in CT and MR images based on 3D deterministic models. - Darko Stern; Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (Image Processing, 2011)

Determination of vertebral pose in 3D by minimization of vertebral asymmetry. - Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (Image Processing, 2011)

Automated tracking and analysis of phospholipid vesicle contours in phase contrast microscopy images. - Peter Usenik; Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (Medical Biol. Eng. Comput., 2011)

Automated measurement of anterior and posterior acetabular sector angles. - Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Computer-Aided Diagnosis, 2012)

Automatic measurement of vertebral body deformations in CT images based on a 3D parametric model. - Darko Stern; Miran Bürmen; Vesna Njagulj; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Computer-Aided Diagnosis, 2012)

Computerized analysis of pelvic incidence from 3D images. - Tomaz Vrtovec; Michiel M. A. Janssen; Franjo Pernus; René M. Castelein; Max A. Viergever (Image Processing, 2012)

A Game-Theoretic Framework for Landmark-Based Image Segmentation. - Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (IEEE Trans. Medical Imaging, 2012)

Statistical shape representation with landmark clustering by solving the assignment problem. - Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Image Processing, 2013)

Quantitative vertebral morphometry in 3D. - Darko Stern; Vesna Njagulj; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Image Processing, 2013)

Determination of the intervertebral disc space from CT images of the lumbar spine. - Robert Korez; Darko Stern; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Image Processing, 2014)

Parametric modeling of the intervertebral disc space in 3D: Application to CT images of the lumbar spine. - Robert Korez; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Comput. Medical Imaging Graph., 2014)

Investigation of the reproducibility and reliability of sagittal vertebral inclination measurements from MR images of the spine. - Tomaz Vrtovec; Franjo Pernus; Bostjan Likar (Comput. Medical Imaging Graph., 2014)

Shape Representation for Efficient Landmark-Based Segmentation in 3-D. - Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (IEEE Trans. Medical Imaging, 2014)

Automated Pedicle Screw Size and Trajectory Planning by Maximization of Fastening Strength. - Dejan Knez; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (CSI@MICCAI, 2015)

Deformable Model-Based Segmentation of Intervertebral Discs from MR Spine Images by Using the SSC Descriptor. - Robert Korez; Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (CSI@MICCAI, 2015)

Optimal reinforcement of training datasets in semi-supervised landmark-based segmentation. - Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Image Processing, 2015)

Segmentation of tongue muscles from super-resolution magnetic resonance images. - Bulat Ibragimov; Jerry L. Prince; Emi Z. Murano; Jonghye Woo; Maureen L. Stone; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Medical Image Anal., 2015)

A Framework for Automated Spine and Vertebrae Interpolation-Based Detection and Model-Based Segmentation. - Robert Korez; Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (IEEE Trans. Medical Imaging, 2015)

Evaluation and Comparison of Anatomical Landmark Detection Methods for Cephalometric X-Ray Images: A Grand Challenge. - Ching-Wei Wang; Cheng-Ta Huang; Meng-Che Hsieh; Chung-Hsing Li; Sheng-Wei Chang; Wei-Cheng Li; Remy Vandaele; Raphaël Marée; Sébastien Jodogne; Pierre Geurts; Cheng Chen 022; Guoyan Zheng; et al. (IEEE Trans. Medical Imaging, 2015)

Accurate landmark-based segmentation by incorporating landmark misdetections. - Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (ISBI, 2016)

Automated determination of pedicle morphometry in the thoracic spine. - Dejan Knez; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (ISBI, 2016)

Sparse and multi-object pose+shape modeling of the three-dimensional scoliotic spine. - Robert Korez; Benjamin Aubert; Thierry Cresson; Stefan Parent; Tomaz Vrtovec; Jacques A. de Guise; Samuel Kadoury (ISBI, 2016)

Manual and Computer-Assisted Pedicle Screw Placement Plans: A Quantitative Comparison. - Dejan Knez; Janez Mohar; Robert J. Cirman; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (CSI@MICCAI, 2016)

Model-Based Segmentation of Vertebral Bodies from MR Images with 3D CNNs. - Robert Korez; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (MICCAI (2), 2016)

Quantitative comparison between the straight-forward and anatomical insertion technique for pedicle screw placement. - Dejan Knez; Janez Mohar; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Image Processing, 2016)

Joint detection and segmentation of vertebral bodies in CT images by sparse representation error minimization. - Robert Korez; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Image Processing, 2016)

A multi-center milestone study of clinical vertebral CT segmentation. - Jianhua Yao 001; Joseph E. Burns; Daniel Forsberg; Alexander Seitel; Abtin Rasoulian; Purang Abolmaesumi; Kerstin Hammernik; Martin Urschler; Bulat Ibragimov; Robert Korez; Tomaz Vrtovec; Isaac Castro-Mateos; et al. (Comput. Medical Imaging Graph., 2016)

A benchmark for comparison of dental radiography analysis algorithms. - Ching-Wei Wang; Cheng-Ta Huang; Jia-Hong Lee; Chung-Hsing Li; Sheng-Wei Chang; Ming-Jhih Siao; Tat-Ming Lai; Bulat Ibragimov; Tomaz Vrtovec; Olaf Ronneberger; Philipp Fischer; Timothy F. Cootes; et al. (Medical Image Anal., 2016)

Computer-Assisted Screw Size and Insertion Trajectory Planning for Pedicle Screw Placement Surgery. - Dejan Knez; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (IEEE Trans. Medical Imaging, 2016)

Semi-automated measurement of the cobb angle from 3D mesh models of the scoliotic spine. - Uros Petkovic; Robert Korez; Tomaz Vrtovec (ISPA, 2017)

Segmentation of Pathological Spines in CT Images Using a Two-Way CNN and a Collision-Based Model. - Robert Korez; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (MSKI@MICCAI, 2017)

3D Cobb Angle Measurements from Scoliotic Mesh Models with Varying Face-Vertex Density. - Uros Petkovic; Robert Korez; Stefan Parent; Samuel Kadoury; Tomaz Vrtovec (MSKI@MICCAI, 2017)

Intervertebral disc segmentation in MR images with 3D convolutional networks. - Robert Korez; Bulat Ibragimov; Bostjan Likar; Franjo Pernus; Tomaz Vrtovec (Image Processing, 2017)

Evaluation and comparison of 3D intervertebral disc localization and segmentation methods for 3D T2 MR data: A grand challenge. - Guoyan Zheng; Chengwen Chu; Daniel L. Belavy; Bulat Ibragimov; Robert Korez; Tomaz Vrtovec; Hugo Hutt; Richard M. Everson; Judith Meakin; Isabel Lopez Andrade; Ben Glocker; Hao Chen 011; et al. (Medical Image Anal., 2017)

Segmentation of Pathological Structures by Landmark-Assisted Deformable Models. - Bulat Ibragimov; Robert Korez; Bostjan Likar; Franjo Pernus; Lei Xing 001; Tomaz Vrtovec (IEEE Trans. Medical Imaging, 2017)

Computer-assisted pedicle screw placement planning: Towards clinical practice. - Dejan Knez; Imad S. Nahle; Tomaz Vrtovec; Stefan Parent; Samuel Kadoury (ISBI, 2018)

Automated Measurement of Pelvic Incidence from X-Ray Images. - Robert Korez; Michael Putzier; Tomaz Vrtovec (MSKI@MICCAI, 2018)

A computerized method for evaluating scoliotic deformities using elliptical pattern recognition in X-ray spine images. - Alan Petrônio Pinheiro; Júlio Cézar Coelho; Antônio Cláudio Paschoarelli Veiga; Tomaz Vrtovec (Comput. Methods Programs Biomed., 2018)

Contour-aware multi-label chest X-ray organ segmentation. - Maksym Kholiavchenko; Ilyas Sirazitdinov; Konstantin Kubrak; R. Badrutdinova; Ramil Kuleev; Yixuan Yuan; Tomaz Vrtovec; Bulat Ibragimov (Int. J. Comput. Assist. Radiol. Surg., 2020)

Multi-agent shape models for hip landmark detection in MR scans. - Imad Eddine Ibrahim Bekkouch; Tamerlan Aidinovich; Tomaz Vrtovec; Ramil Kuleev; Bulat Ibragimov (Image Processing, 2021)

Segmentation of Organs-At-Risk from Ct and Mr Images of the Head and Neck: Baseline Results. - Gasper Podobnik; Bulat Ibragimov; Primoz Strojan; Primoz Peterlin; Tomaz Vrtovec (ISBI, 2022)

Parotid gland segmentation with nnU-Net: deployment scenario and inter-observer variability analysis. - Gasper Podobnik; Primoz Strojan; Primoz Peterlin; Bulat Ibragimov; Tomaz Vrtovec (Image Processing, 2022)

Multi-landmark environment analysis with reinforcement learning for pelvic abnormality detection and quantification. - Imad Eddine Ibrahim Bekkouch; Bulat Maksudov; Semen Kiselev; Tamerlan Mustafaev; Tomaz Vrtovec; Bulat Ibragimov (Medical Image Anal., 2022)

Detection of Aortic Cusp Landmarks in Computed Tomography Images with Deep Learning. - Luka Skrlj; Matija Jelenc; Tomaz Vrtovec (FIMH, 2023)

Multimodal CT and MR Segmentation of Head and Neck Organs-at-Risk. - Gasper Podobnik; Primoz Strojan; Primoz Peterlin; Bulat Ibragimov; Tomaz Vrtovec (MICCAI (4), 2023)

Implicitly Explicit: Segmenting Vertebrae with Deep Implicit Statistical Shape Models. - Gasper Podobnik; Domen Ocepek; Luka Skrlj; Tomaz Vrtovec (ShapeMI@MICCAI, 2024)

HDilemma: Are Open-Source Hausdorff Distance Implementations Equivalent? - Gasper Podobnik; Tomaz Vrtovec (MICCAI (9), 2024)

Metrics Revolutions: Groundbreaking Insights into the Implementation of Metrics for Biomedical Image Segmentation. - Gasper Podobnik; Tomaz Vrtovec (CoRR, 2024)

DentAssignNet: Assignment Network for Dental Cast Labeling in the Presence of Dental Abnormalities. - Tudor Dascalu; Shaqayeq Ramezanzade; Azam Bakhshandeh; Lars Bjorndal; Raluca Iurcov; Tomaz Vrtovec; Bulat Ibragimov (IEEE J. Biomed. Health Informatics, 2025)