Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. - Keren Yizhak; Tomer Benyamini; Wolfram Liebermeister; Eytan Ruppin; Tomer Shlomi (Bioinform., 2010)

Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect. - Tomer Shlomi; Tomer Benyamini; Eyal Gottlieb; Roded Sharan; Eytan Ruppin (PLoS Comput. Biol., 2011)

OFF-set: one-pass factorization of feature sets for online recommendation in persistent cold start settings. - Michal Aharon; Natalie Aizenberg; Edward Bortnikov; Ronny Lempel; Roi Adadi; Tomer Benyamini; Liron Levin; Ran Roth; Ohad Serfaty (RecSys, 2013)