Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human. - James R. Wagner; Bing Ge; Dmitry Pokholok; Kevin L. Gunderson; Tomi Pastinen; Mathieu Blanchette (PLoS Comput. Biol., 2010)

funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types. - Kathleen Oros Klein; Stepan Grinek; Sasha Bernatsky; Luigi Bouchard; Antonio Ciampi; Ines Colmegna; Jean-Philippe Fortin; Long Gao; Marie-France Hivert; Marie Hudson; Michael S. Kobor; Aurélie Labbe; et al. (Bioinform., 2016)

Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning. - Toby Dylan Hocking; Patricia Goerner-Potvin; Andreanne Morin; Xiaojian Shao; Tomi Pastinen; Guillaume Bourque (Bioinform., 2017)