Improving Keyword-Based Topic Classification in Cancer Patient Forums with Multilingual Transformers. - T. M. Buonocore; Enea Parimbelli; Lucia Sacchi; Roberto Bellazzi; L. del Campo; Silvana Quaglini (MedInfo, 2021)

Evaluation of XAI on ALS 6-months mortality prediction. - Tommaso Mario Buonocore; Giovanna Nicora; Arianna Dagliati; Enea Parimbelli (CLEF (Working Notes), 2022)

Localising In-Domain Adaptation of Transformer-Based Biomedical Language Models. - Tommaso Mario Buonocore; Claudio Crema; Alberto Redolfi; Riccardo Bellazzi; Enea Parimbelli (CoRR, 2022)

A Rule-Free Approach for Cardiological Registry Filling from Italian Clinical Notes with Question Answering Transformers. - Tommaso Mario Buonocore; Enea Parimbelli; Valentina Tibollo; Carlo Napolitano; Silvia G. Priori; Riccardo Bellazzi (AIME, 2023)

Predicting and Explaining Risk of Disease Worsening Using Temporal Features in Multiple Sclerosis. - Tommaso Mario Buonocore; Pietro Bosoni; Giovanna Nicora; Mahin Vazifehdan; Riccardo Bellazzi; Enea Parimbelli; Arianna Dagliati (CLEF (Working Notes), 2023)

Advancing Italian Biomedical Information Extraction with Large Language Models: Methodological Insights and Multicenter Practical Application. - Claudio Crema; Tommaso Mario Buonocore; Silvia Fostinelli; Enea Parimbelli; Federico Verde; Cira Fundarò; Marina Manera; Matteo Cotta Ramusino; Marco Capelli; Alfredo Costa; Giuliano Binetti; Riccardo Bellazzi; et al. (CoRR, 2023)

Why did AI get this one wrong? - Tree-based explanations of machine learning model predictions. - Enea Parimbelli; Tommaso Mario Buonocore; Giovanna Nicora; Wojtek Michalowski; Szymon Wilk; Riccardo Bellazzi (Artif. Intell. Medicine, 2023)

Localizing in-domain adaptation of transformer-based biomedical language models. - Tommaso Mario Buonocore; Claudio Crema; Alberto Redolfi; Riccardo Bellazzi; Enea Parimbelli (J. Biomed. Informatics, 2023)

Prognostic models of in-hospital mortality of intensive care patients using neural representation of unstructured text: A systematic review and critical appraisal. - Iacopo Vagliano; Noman Dormosh; Miguel Rios; Torec T. Luik; T. M. Buonocore; Paul W. G. Elbers; Dave A. Dongelmans; Martijn C. Schut; Ameen Abu-Hanna (J. Biomed. Informatics, 2023)

Advancing Italian biomedical information extraction with transformers-based models: Methodological insights and multicenter practical application. - Claudio Crema; Tommaso Mario Buonocore; Silvia Fostinelli; Enea Parimbelli; Federico Verde; Cira Fundarò; Marina Manera; Matteo Cotta Ramusino; Marco Capelli; Alfredo Costa; Giuliano Binetti; Riccardo Bellazzi; et al. (J. Biomed. Informatics, 2023)

Do You Trust Your Model Explanations? An Analysis of XAI Performance Under Dataset Shift. - Lorenzo Peracchio; Giovanna Nicora; Tommaso Mario Buonocore; Riccardo Bellazzi; Enea Parimbelli (AIME (2), 2024)

Reshaping free-text radiology notes into structured reports with generative question answering transformers. - Laura Bergomi; Tommaso Mario Buonocore; Paolo Antonazzo; Lorenzo Alberghi; Riccardo Bellazzi; Lorenzo Preda; Chandra Bortolotto; Enea Parimbelli (Artif. Intell. Medicine, 2024)

Evaluation of Predictive Reliability to Foster Trust in Artificial Intelligence. A case study in Multiple Sclerosis. - Lorenzo Peracchio; Giovanna Nicora; Enea Parimbelli; Tommaso Mario Buonocore; Roberto Bergamaschi; Eleonora Tavazzi; Arianna Dagliati; Riccardo Bellazzi (CoRR, 2024)

Reshaping Free-Text Radiology Notes Into Structured Reports With Generative Transformers. - Laura Bergomi; Tommaso Mario Buonocore; Paolo Antonazzo; Lorenzo Alberghi; Riccardo Bellazzi; Lorenzo Preda; Chandra Bortolotto; Enea Parimbelli (CoRR, 2024)

Igea: a Decoder-Only Language Model for Biomedical Text Generation in Italian. - Tommaso Mario Buonocore; Simone Rancati; Enea Parimbelli (CoRR, 2024)

BAT: A Toolkit for Biomedical Text Augmentation. - Laura Bergomi; Enea Parimbelli; Daniele Pala; Tommaso Mario Buonocore (AIME (2), 2025)

Enhancing RAGs for Rheumatology Triage: Strategies for Optimized Knowledge Retrieval. - Tommaso Mario Buonocore; Emanuele Cardinale; Garifallia Sakellariou; Riccardo Bellazzi; Lucia Sacchi (AIME (2), 2025)

From Regex to Encoders: Low-Effort Negation Detection for Healthcare Data Integration in Italian Hospitals. - Tommaso Mario Buonocore; Sonia Mognaschi; Lorenzo Beretta 002; Serena Venturelli; Bruno Fattizzo; Eleonora Bruschi; Chiara Cassani; Simone Benatti; Sara Marinoni; Simone Vettoretti; Matteo Gabetta (AIME (2), 2025)

SARITA: a large language model for generating the S1 subunit of the SARS-CoV-2 spike protein. - Simone Rancati; Giovanna Nicora; Laura Bergomi; Tommaso Mario Buonocore; Daniel M. Czyz; Enea Parimbelli; Riccardo Bellazzi; Marco Salemi; Mattia Prosperi; Simone Marini (Briefings Bioinform., 2025)

RelAI: an automated approach to judge pointwise ML prediction reliability. - Lorenzo Peracchio; Giovanna Nicora; Enea Parimbelli; Tommaso Mario Buonocore; Eleonora Tavazzi; Roberto Bergamaschi; Arianna Dagliati; Riccardo Bellazzi (Int. J. Medical Informatics, 2025)

RAR: Setting Knowledge Tripwires for Retrieval Augmented Rejection. - Tommaso Mario Buonocore; Enea Parimbelli (CoRR, 2025)