An Automatic River Planning Operating System (ARPOS). - Enrico Martino; Bruno Simeone; Tommaso Toffoli (Optimization Techniques, 1973)

Computation and Construction Universality of Reversible Cellular Automata. - Tommaso Toffoli (J. Comput. Syst. Sci., 1977)

Cellular Automata Mechanics. - Tommaso Toffoli (1977)

Integration of the Phase-Difference Relations in Asynchronous Sequential Networks. - Tommaso Toffoli (ICALP, 1978)

Reversible Computing. - Tommaso Toffoli (ICALP, 1980)

Bicontinuous Extensions of Invertible Combinatorial Functions. - Tommaso Toffoli (Math. Syst. Theory, 1981)

An Efficient Algorithm for Determining the Length of the Longest Dead Path in a "LIFO" Branch-and-Bound Exploration Schema. - Stefano Pallottino; Tommaso Toffoli (ACM Trans. Math. Softw., 1981)

Cellular automata machines - a new environment for modeling. - Tommaso Toffoli; Norman Margolus (MIT Press, 1987)

Cellular Automata Machines. - Norman Margolus; Tommaso Toffoli (Complex Syst., 1987)

Position Statement for Panel 1: Frontiers in Computing. - Tommaso Toffoli (IFIP Congress, 1989)

Massively Parallel Architectures and Polymer Simulation. - B. Ostrovsky; M. A. Smith; M. Biafore; Yaneer Bar-Yam; Y. Rabin; Norman Margolus; Tommaso Toffoli (PPSC, 1993)

Programmable Matter: Concepts and Realization. - Tommaso Toffoli; Norman Margolus (Int. J. High Speed Comput., 1993)

Fine-Grained Models and Massively-Parallel Architectures: The Case for Programmable Matter. - Tommaso Toffoli (PP, 1995)

Three-Dimensional Rotations by Three Shears. - Tommaso Toffoli; Jason Quick (CVGIP Graph. Model. Image Process., 1997)

Programmable matter methods. - Tommaso Toffoli (Future Gener. Comput. Syst., 1999)

Design Principles for Achieving High-Performance Submicron Digital Technologies. - Edward Fredkin; Tommaso Toffoli (Collision-Based Computing, 2002)

Conservative Logic. - Edward Fredkin; Tommaso Toffoli (Collision-Based Computing, 2002)

Symbol Super Colliders. - Tommaso Toffoli (Collision-Based Computing, 2002)

A Man and His Computer: An Issue of Adaptive Fitness and Personal Satisfaction. - Tommaso Toffoli (UMC, 2002)

A pedestrian's introduction to spacetime crystallography. - Tommaso Toffoli (IBM J. Res. Dev., 2004)

Nothing Makes Sense in Computing Except in the Light of Evolution. - Tommaso Toffoli (Int. J. Unconv. Comput., 2004)

How to turn a second-order cellular automaton into a lattice gas: a new inversion scheme. - Tommaso Toffoli; Silvio Capobianco; Patrizia Mentrasti (Theor. Comput. Sci., 2004)

Thermodynamical cost of reversible computing. - Lev B. Levitin; Tommaso Toffoli (Conf. Computing Frontiers, 2005)

Specific ergodicity: an informative indicator for invertible computational media. - Tommaso Toffoli; Lev B. Levitin (Conf. Computing Frontiers, 2005)

Thermodynamics of used punched tape: A weak and a strong equivalence principle - Tommaso Toffoli (CoRR, 2005)

Thermodynamic Cost of Reversible Computing. - Lev B. Levitin; Tommaso Toffoli (ISIT, 2006)

When-and how-can a cellular automaton be rewritten as a lattice gas? - Tommaso Toffoli; Silvio Capobianco; Patrizia Mentrasti (Theor. Comput. Sci., 2008)

From Such Simple a Beginning: The Momentous Consequences of Physics' Microscopic Reversibility for Communication and Computation - and Almost Anything Else. - Tommaso Toffoli (RC@ETAPS, 2009)

Lattice-Gas vs Cellular Automata: The Whole Story at Last. - Tommaso Toffoli (J. Cell. Autom., 2009)

Dissipative CA Computation Without Power Sources? - Silvio Capobianco; Tommaso Toffoli (J. Cell. Autom., 2010)

Conceptual Background for the Quad Prize. - Tommaso Toffoli (J. Cell. Autom., 2010)

Can Anything from Noether's Theorem Be Salvaged for Discrete Dynamical Systems? - Silvio Capobianco; Tommaso Toffoli (UC, 2011)

Work recoverable from two-particle information. - Lev B. Levitin; Tommaso Toffoli (ISIT, 2012)

Conserved quantities in discrete dynamics: what can be recovered from Noether's theorem, how, and why? - Silvio Capobianco; Tommaso Toffoli (Nat. Comput., 2012)

Information retrievable from an image in natural light. - Lev B. Levitin; Tommaso Toffoli (ICACCI, 2015)

What Automata Can Provide a Medium for Life? - Tommaso Toffoli (Automata, 2016)

Entropy? Honest! - Tommaso Toffoli (Entropy, 2016)

Waiting for the rapture: What can we do with computers to (hopefully) witness the emergence of life? - Tommaso Toffoli (Nat. Comput., 2019)