A normalization strategy for comparing tag count data. - Koji Kadota; Tomoaki Nishiyama; Kentaro Shimizu (Algorithms Mol. Biol., 2012)

TCC: an R package for comparing tag count data with robust normalization strategies. - Jianqiang Sun; Tomoaki Nishiyama; Kentaro Shimizu; Koji Kadota (BMC Bioinform., 2013)

ppdb: plant promoter database version 3.0. - Ayaka Hieno; Hushna Ara Naznin; Mitsuro Hyakumachi; Tetsuya Sakurai; Mututomo Tokizawa; Hiroyuki Koyama; Naoki Sato; Tomoaki Nishiyama; Mitsuyasu Hasebe; Andreas D. Zimmer; Daniel Lang 001; Ralf Reski; et al. (Nucleic Acids Res., 2014)