A Linear Time Algorithm that Infers Hidden Strings from Their Concatenations. - Tomohiro Yasuda (Inf. Media Technol., 2009)

ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information. - Shin Suzuki; Tomohiro Yasuda; Yuichi Shiraishi; Satoru Miyano; Masao Nagasaki (BMC Bioinform., 2011)

ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs. - Tomohiro Yasuda; Shin Suzuki; Masao Nagasaki; Satoru Miyano (BMC Bioinform., 2012)

Genome Mapping by a 60-core Processor. - Tomohiro Yasuda; Asako Koike (BIOINFORMATICS, 2014)

Inferring the global structure of chromosomes from structural variations. - Tomohiro Yasuda; Satoru Miyano (BMC Genom., 2015)