On easy implementation of a variant of the replica exchange with solute tempering in GROMACS. - Tsuyoshi Terakawa; Tomoshi Kameda; Shoji Takada (J. Comput. Chem., 2011)

Analysis of base-pairing probabilities of RNA molecules involved in protein-RNA interactions. - Junichi Iwakiri; Tomoshi Kameda; Kiyoshi Asai; Michiaki Hamada (Bioinform., 2013)

Comprehensive prediction of lncRNA-RNA interactions in human transcriptome. - Goro Terai; Junichi Iwakiri; Tomoshi Kameda; Michiaki Hamada; Kiyoshi Asai (BMC Genom., 2016)

Dissociation Rate Calculation via Constant-Force Steered Molecular Dynamics Simulation. - Shinji Iida; Tomoshi Kameda (J. Chem. Inf. Model., 2023)