An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures. - Tatsuya Akutsu; Tomoya Mori; Takeyuki Tamura; Daiji Fukagawa; Atsuhiro Takasu; Etsuji Tomita (CISIS, 2011)

A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees. - Tomoya Mori; Takeyuki Tamura; Daiji Fukagawa; Atsuhiro Takasu; Etsuji Tomita; Tatsuya Akutsu (J. Comput. Biol., 2012)

Experiment of indoor position presumption based on RSSI of Bluetooth LE beacon. - Shinsuke Kajioka; Tomoya Mori; Takahiro Uchiya; Ichi Takumi; Hiroshi Matsuo (GCCE, 2014)

An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data. - Takanori Hasegawa; Tomoya Mori; Rui Yamaguchi; Seiya Imoto; Satoru Miyano; Tatsuya Akutsu (J. Comput. Biol., 2014)

Experiments of position estimation by BLE beacons on actual situations. - Tomoya Mori; Shinsuke Kajioka; Takahiro Uchiya; Ichi Takumi; Hiroshi Matsuo (GCCE, 2015)

Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks. - Takanori Hasegawa; Tomoya Mori; Rui Yamaguchi; Teppei Shimamura; Satoru Miyano; Seiya Imoto; Tatsuya Akutsu (BMC Syst. Biol., 2015)

Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks. - Tomoya Mori; Max Flöttmann; Marcus Krantz; Tatsuya Akutsu; Edda Klipp (BMC Syst. Biol., 2015)

Similar Subtree Search Using Extended Tree Inclusion. - Tomoya Mori; Atsuhiro Takasu; Jesper Jansson 001; Jaewook Hwang; Takeyuki Tamura; Tatsuya Akutsu (IEEE Trans. Knowl. Data Eng., 2015)

Methods for Analyzing Tree-Structured Data and their Applications to Computational Biology. - Tomoya Mori (2015)

A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models. - Takanori Hasegawa; Atsushi Niida; Tomoya Mori; Teppei Shimamura; Rui Yamaguchi; Satoru Miyano; Tatsuya Akutsu; Seiya Imoto (Comput. Stat. Data Anal., 2016)

Exact Identification of the Structure of a Probabilistic Boolean Network from Samples. - Xiaoqing Cheng; Tomoya Mori; Yushan Qiu; Wai-Ki Ching; Tatsuya Akutsu (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Queueing theoretic approach to job assignment strategy considering various inter-arrival of job in fog computing. - Tomoya Mori; Yoichi Utsunomiya; Xuejun Tian; Takashi Okuda (APNOMS, 2017)

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data. - Yuki Kato; Tomoya Mori; Kengo Sato; Shingo Maegawa; Hiroshi Hosokawa; Tatsuya Akutsu (Bioinform., 2017)

Design concept of a lightweight runtime environment for robot software components onto embedded devices: work-in-progress. - Hideki Takase; Tomoya Mori; Kazuyoshi Takagi; Naofumi Takagi (EMSOFT, 2018)

mROS: A Lightweight Runtime Environment for Robot Software Components onto Embedded Devices. - Hideki Takase; Tomoya Mori; Kazuyoshi Takagi; Naofumi Takagi (HEART, 2019)

Comparison of Pseudoknotted RNA Secondary Structures by Topological Centroid Identification and Tree Edit Distance. - Feiqi Wang; Tatsuya Akutsu; Tomoya Mori (J. Comput. Biol., 2020)

mROS: A Lightweight Runtime Environment of ROS 1 nodes for Embedded Devices. - Hideki Takase; Tomoya Mori; Kazuyoshi Takagi; Naofumi Takagi (J. Inf. Process., 2020)

Tree Edit Distance with Variables. Measuring the Similarity between Mathematical Formulas. - Tatsuya Akutsu; Tomoya Mori; Naotoshi Nakamura; Satoshi Kozawa; Yuhei Ueno; Thomas N. Sato (CoRR, 2021)

On the Complexity of Tree Edit Distance with Variables. - Tatsuya Akutsu; Tomoya Mori; Naotoshi Nakamura; Satoshi Kozawa; Yuhei Ueno; Thomas N. Sato (ISAAC, 2022)

Identification of periodic attractors in Boolean networks using a priori information. - Ulrike Münzner; Tomoya Mori; Marcus Krantz; Edda Klipp; Tatsuya Akutsu (PLoS Comput. Biol., 2022)

eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio-temporal architectures of cells. - Tomoya Mori; Toshiro Takase; Kuan-Chun Lan; Junko Yamane; Cantas Alev; Azuma Kimura; Kenji Osafune; Jun K. Yamashita; Tatsuya Akutsu; Hiroaki Kitano; Wataru Fujibuchi (BMC Bioinform., 2023)

DiCleave: a deep learning model for predicting human Dicer cleavage sites. - Lixuan Mu; Jiangning Song; Tatsuya Akutsu; Tomoya Mori (BMC Bioinform., 2024)

A Method for Computing the Minimum Common Feedback Set for a Multilayer Network and Its Application to Analysis of Biological Data. - Shogo Nakashima; Tomoya Mori; Ruiming Li; Tatsuya Akutsu (J. Inf. Process., 2025)