Protein Sequence Analysis by Parallel Inference Machine. - Masato Ishikawa; Masaki Hoshida; Makoto Hirosawa; Tomoyuki Toya; Kentaro Onizuka; Katsumi Nitta (FGCS, 1992)

MASCOT: multiple alignment system for protein sequences based on three- way dynamic programming. - Makoto Hirosawa; Masaki Hoshida; Masato Ishikawa; Tomoyuki Toya (Comput. Appl. Biosci., 1993)

Multiple sequence alignment by parallel simulated annealing. - Masato Ishikawa; Tomoyuki Toya; Masaki Hoshida; Katsumi Nitta; A. Ogiwara; Minoru Kanehisa (Comput. Appl. Biosci., 1993)