BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. - Takayoshi Shoudai; Michael Lappe; Satoru Miyano; Ayumi Shinohara; Takeo Okazaki; Setsuo Arikawa; Tomoyuki Uchida; Shinichi Shimozono; Takeshi Shinohara; Satoru Kuhara (ISMB, 1995)

Parallel Algorithms for Refutation Tree Problem on Formal Graph Systems. - Tomoyuki Uchida; Takayoshi Shoudai; Satoru Miyano (IEICE Trans. Inf. Syst., 1995)

An Automatic Document Coloring and Browsing System. - Tomoyuki Uchida; Hidehiko Tanaka (HCI (2), 1997)

Toward Genomic Hypothesis Creator: View Designer for Discovery. - Osamu Maruyama; Tomoyuki Uchida; Takayoshi Shoudai; Satoru Miyano (Discovery Science, 1998)

Designing Views in HypothesisCreator: System for Assisting in Discovery. - Osamu Maruyama; Tomoyuki Uchida; Kim Lan Sim; Satoru Miyano (Discovery Science, 1999)

Inductive Inference of Regular Term Free Languages and Its Application to Knowledge Discovery. - Takayoshi Shoudai; Tetsuhiro Miyahara; Tomoyuki Uchida; Satoshi Matsumoto (EJC, 1999)

Discovering New Knowledge from Graph Data Using Inductive Logic Programming. - Tetsuhiro Miyahara; Takayoshi Shoudai; Tomoyuki Uchida; Tetsuji Kuboyama; Kenichi Takahashi; Hiroaki Ueda (ILP, 1999)

KD-FGS: A Knowledge Discovery System from Graph Data Using Formal Graph System. - Tetsuhiro Miyahara; Tomoyuki Uchida; Tetsuji Kuboyama; Tasuya Yamamoto; Kenichi Takahashi; Hiroaki Ueda (PAKDD, 1999)

A New Framework for Discovering Knowledge from Two-Dimensional Structured Data Using Layout Formal Graph System. - Tomoyuki Uchida; Yuko Itokawa; Takayoshi Shoudai; Tetsuhiro Miyahara; Yasuaki Nakamura (ALT, 2000)

Polynomial Time Matching Algorithms for Tree-Like Structured Patterns in Knowledge Discovery. - Tetsuhiro Miyahara; Takayoshi Shoudai; Tomoyuki Uchida; Kenichi Takahashi; Hiroaki Ueda (PAKDD, 2000)

Polynomial Time Algorithms for Finding Unordered Tree Patterns with Internal Variables. - Takayoshi Shoudai; Tomoyuki Uchida; Tetsuhiro Miyahara (FCT, 2001)

Discovery of Frequent Tree Structured Patterns in Semistructured Web Documents. - Tetsuhiro Miyahara; Takayoshi Shoudai; Tomoyuki Uchida; Kenichi Takahashi; Hiroaki Ueda (PAKDD, 2001)

ProDDO: a database of disordered proteins from the Protein Data Bank (PDB). - Kim Lan Sim; Tomoyuki Uchida; Satoru Miyano (Bioinform., 2001)

Learning of Finite Unions of Tree Patterns with Internal Structured Variables from Queries. - Satoshi Matsumoto; Takayoshi Shoudai; Tetsuhiro Miyahara; Tomoyuki Uchida (Australian Joint Conference on Artificial Intelligence, 2002)

Polynomial Time Inductive Inference of Ordered Tree Patterns with Internal Structured Variables from Positive Data. - Yusuke Suzuki; Ryuta Akanuma; Takayoshi Shoudai; Tetsuhiro Miyahara; Tomoyuki Uchida (COLT, 2002)

A Polynomial Time Matching Algorithm of Structured Ordered Tree Patterns for Data Mining from Semistructured Data. - Yusuke Suzuki; Kohtaro Inomae; Takayoshi Shoudai; Tetsuhiro Miyahara; Tomoyuki Uchida (ILP, 2002)

Extracting Characteristic Structures among Words in Semistructured Documents. - Kazuyoshi Furukawa; Tomoyuki Uchida; Kazuya Yamada; Tetsuhiro Miyahara; Takayoshi Shoudai; Yasuaki Nakamura (PAKDD, 2002)

Discovery of Frequent Tag Tree Patterns in Semistructured Web Documents. - Tetsuhiro Miyahara; Yusuke Suzuki; Takayoshi Shoudai; Tomoyuki Uchida; Kenichi Takahashi; Hiroaki Ueda (PAKDD, 2002)

Learning of Finite Unions of Tree Patterns with Repeated Internal Structured Variables from Queries. - Satoshi Matsumoto; Yusuke Suzuki; Takayoshi Shoudai; Tetsuhiro Miyahara; Tomoyuki Uchida (ALT, 2003)

Efficient Learning of Ordered and Unordered Tree Patterns with Contractible Variables. - Yusuke Suzuki; Takayoshi Shoudai; Satoshi Matsumoto; Tomoyuki Uchida; Tetsuhiro Miyahara (ALT, 2003)

Efficient Learning of Unlabeled Term Trees with Contractible Variables from Positive Data. - Yusuke Suzuki; Takayoshi Shoudai; Satoshi Matsumoto; Tomoyuki Uchida (ILP, 2003)

An Effective Grammar-Based Compression Algorithm for Tree Structured Data. - Kazunori Yamagata; Tomoyuki Uchida; Takayoshi Shoudai; Yasuaki Nakamura (ILP, 2003)

Finding Frequent Subgraphs from Graph Structured Data with Geometric Information and Its Application to Lossless Compression. - Yuko Itokawa; Tomoyuki Uchida; Takayoshi Shoudai; Tetsuhiro Miyahara; Yasuaki Nakamura (PAKDD, 2003)

Extraction of Tag Tree Patterns with Contractible Variables from Irregular Semistructured Data. - Tetsuhiro Miyahara; Yusuke Suzuki; Takayoshi Shoudai; Tomoyuki Uchida; Sachio Hirokawa; Kenichi Takahashi; Hiroaki Ueda (PAKDD, 2003)

Discovery of Maximally Frequent Tag Tree Patterns with Contractible Variables from Semistructured Documents. - Tetsuhiro Miyahara; Yusuke Suzuki; Takayoshi Shoudai; Tomoyuki Uchida; Kenichi Takahashi; Hiroaki Ueda (PAKDD, 2004)

Finding Frequent Structural Features among Words in Tree-Structured Documents. - Tomoyuki Uchida; Tomonori Mogawa; Yasuaki Nakamura (PAKDD, 2004)

A Polynomial Time Matching Algorithm of Ordered Tree Patterns Having Height-Constrained Variables. - Kazuhide Aikou; Yusuke Suzuki; Takayoshi Shoudai; Tomoyuki Uchida; Tetsuhiro Miyahara (CPM, 2005)

Polynomial Time Inductive Inference of TTSP Graph Languages from Positive Data. - Ryoji Takami; Yusuke Suzuki; Tomoyuki Uchida; Takayoshi Shoudai; Yasuaki Nakamura (ILP, 2005)

Discovery of Maximally Frequent Tag Tree Patterns with Height-Constrained Variables from Semistructured Web Documents. - Yusuke Suzuki; Tetsuhiro Miyahara; Takayoshi Shoudai; Tomoyuki Uchida; Yasuaki Nakamura (WIRI, 2005)

Extracting Structural Features Among Words from Document Data Streams. - Kumiko Ishida; Tomoyuki Uchida; Kayo Kawamoto (Australian Conference on Artificial Intelligence, 2006)

Ordered term tree languages which are polynomial time inductively inferable from positive data. - Yusuke Suzuki; Takayoshi Shoudai; Tomoyuki Uchida; Tetsuhiro Miyahara (Theor. Comput. Sci., 2006)

Exact Learning of Finite Unions of Graph Patterns from Queries. - Rika Okada; Satoshi Matsumoto; Tomoyuki Uchida; Yusuke Suzuki; Takayoshi Shoudai (ALT, 2007)

Mining of Frequent Block Preserving Outerplanar Graph Structured Patterns. - Yosuke Sasaki; Hitoshi Yamasaki; Takayoshi Shoudai; Tomoyuki Uchida (ILP, 2007)

Fabrication of Cell-Adhesion Surface and Arteriole Model by Photolithography. - Fumihito Arai; Takuma Nakano; Mika Tada; Yu-Ching Lin; Seiichi Ikeda; Tomoyuki Uchida; Hiroyuki Oura; Toshio Fukuda; Takehisa Matsuda; Makoto Negoro (J. Robotics Mechatronics, 2007)

Fabrication of biodegradable scaffolds by use of self-assembled magnetic sugar particles as a casting template. - Tomoyuki Uchida; Hiroyuki Oura; Seiichi Ikeda; Fumihito Arai; Makoto Negoro; Toshio Fukuda (ICRA, 2008)

Learning Block-Preserving Outerplanar Graph Patterns and Its Application to Data Mining. - Hitoshi Yamasaki; Yosuke Sasaki; Takayoshi Shoudai; Tomoyuki Uchida; Yusuke Suzuki (ILP, 2008)

Learning of Finite Unions of Tree Patterns with Internal Structured Variables from Queries. - Satoshi Matsumoto; Takayoshi Shoudai; Tomoyuki Uchida; Tetsuhiro Miyahara; Yusuke Suzuki (IEICE Trans. Inf. Syst., 2008)

Algorithm for Enumerating All Maximal Frequent Tree Patterns among Words in Tree-Structured Documents and Its Application. - Tomoyuki Uchida; Kayo Kawamoto (FGIT-DTA, 2009)

Polynomial Time Inductive Inference of TTSP Graph Languages from Positive Data. - Ryoji Takami; Yusuke Suzuki; Tomoyuki Uchida; Takayoshi Shoudai (IEICE Trans. Inf. Syst., 2009)

Learning block-preserving graph patterns and its application to data mining. - Hitoshi Yamasaki; Yosuke Sasaki; Takayoshi Shoudai; Tomoyuki Uchida; Yusuke Suzuki (Mach. Learn., 2009)

Polynomial Time Inductive Inference of Cograph Pattern Languages from Positive Data. - Yuta Yoshimura; Takayoshi Shoudai; Yusuke Suzuki; Tomoyuki Uchida; Tetsuhiro Miyahara (ILP, 2011)

Acquisition of Characteristic TTSP Graph Patterns by Genetic Programming. - Satoshi Nagai; Tetsuhiro Miyahara; Yusuke Suzuki; Tomoyuki Uchida (IIAI-AAI, 2012)

Polynomial Time Pattern Matching Algorithm for Ordered Graph Patterns. - Takahiro Hino; Yusuke Suzuki; Tomoyuki Uchida; Yuko Itokawa (ILP, 2012)

Acquisition of Characteristic Tree Patterns with VLDC's by Genetic Programming and Edit Distance. - Shohei Nakai; Tetsuhiro Miyahara; Tetsuji Kuboyama; Tomoyuki Uchida; Yusuke Suzuki (IIAI-AAI, 2013)

Electrical investigation of Cu pumping in through-silicon vias for BEOL reliability in 3D integration. - Chuan-An Cheng; Ryuichi Sugie; Tomoyuki Uchida; Kou-Hua Chen; Chi-Tsung Chiu; Kuan-Neng Chen (3DIC, 2015)

Acquisition of characteristic block preserving outerplanar graph patterns from positive and negative data using Genetic Programming and tree representation of graph patterns. - Yuto Ouchiyama; Tetsuhiro Miyahara; Yusuke Suzuki; Tomoyuki Uchida; Tetsuji Kuboyama; Fumiya Tokuhara (IWCIA, 2015)

Acquisition of Multiple Tree Structured Patterns by an Evolutionary Method Using Sets of Tag Tree Patterns as Individuals. - Shotarou Tani; Tetsuhiro Miyahara; Yusuke Suzuki; Tomoyuki Uchida (IIAI-AAI, 2015)

An Efficient Pattern Matching Algorithm for Ordered Term Tree Patterns. - Yusuke Suzuki; Takayoshi Shoudai; Tomoyuki Uchida; Tetsuhiro Miyahara (IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2015)

Using canonical representations of block tree patterns in acquisition of characteristic block preserving outerplanar graph patterns. - Fumiya Tokuhara; Tetsuhiro Miyahara; Yusuke Suzuki; Tomoyuki Uchida; Tetsuji Kuboyama (IWCIA, 2016)

Acquisition of Characteristic Block Preserving Outerplanar Graph Patterns by Genetic Programming Using Label Information. - Fumiya Tokuhara; Tetsuhiro Miyahara; Yusuke Suzuki; Tomoyuki Uchida; Tetsuji Kuboyama (IIAI-AAI, 2016)

Acquisition of multiple block preserving outerplanar graph patterns by an evolutionary method for graph pattern sets. - Fumiya Tokuhara; Tetsuhiro Miyahara; Tetsuji Kuboyama; Yusuke Suzuki; Tomoyuki Uchida (IWCIA, 2017)

A Context-Aware Fitness Function Based on Feature Selection for Evolutionary Learning of Characteristic Graph Patterns. - Fumiya Tokuhara; Tetsuhiro Miyahara; Tetsuji Kuboyama; Yusuke Suzuki; Tomoyuki Uchida (ACIIDS (1), 2017)

Acquisition of Multiple Graph Structured Patterns by an Evolutionary Method Using Sets of TTSP Graph Patterns as Individuals. - Yuuki Yamagata; Tetsuhiro Miyahara; Yusuke Suzuki; Tomoyuki Uchida; Fumiya Tokuhara; Tetsuji Kuboyama (IIAI-AAI, 2017)

Learning of Primitive Formal Systems Defining Labelled Ordered Tree Languages via Queries. - Tomoyuki Uchida; Satoshi Matsumoto; Takayoshi Shoudai; Yusuke Suzuki; Tetsuhiro Miyahara (ILP (Late Breaking Papers), 2017)

Polynomial Time Inductive Inference of Languages of Ordered Term Tree Patterns with Height-Constrained Variables from Positive Data. - Takayoshi Shoudai; Kazuhide Aikoh; Yusuke Suzuki; Satoshi Matsumoto; Tetsuhiro Miyahara; Tomoyuki Uchida (IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2017)

An Efficient Pattern Matching Algorithm for Unordered Term Tree Patterns of Bounded Dimension. - Takayoshi Shoudai; Tetsuhiro Miyahara; Tomoyuki Uchida; Satoshi Matsumoto; Yusuke Suzuki (IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2018)

Polynomial Time Learnability of Graph Pattern Languages Defined by Cographs. - Takayoshi Shoudai; Yuta Yoshimura; Yusuke Suzuki; Tomoyuki Uchida; Tetsuhiro Miyahara (IEICE Trans. Inf. Syst., 2018)

Acquisition of characteristic sets of block preserving outerplanar graph patterns by a two-stage evolutionary learning method for graph pattern sets. - Fumiya Tokuhara; Tetsuhiro Miyahara; Tetsuji Kuboyama; Yusuke Suzuki; Tomoyuki Uchida (Int. J. Comput. Intell. Stud., 2018)

Aggregative context-aware fitness functions based on feature selection for evolutionary learning of characteristic graph patterns. - Fumiya Tokuhara; Tetsuhiro Miyahara; Tetsuji Kuboyama; Yusuke Suzuki; Tomoyuki Uchida (Vietnam. J. Comput. Sci., 2018)

Using Label Information in a Genetic Programming Based Method for Acquiring Block Preserving Outerplanar Graph Patterns with Wildcards. - Fumiya Tokuhara; Shiho Okinaga; Tetsuhiro Miyahara; Yusuke Suzuki; Tetsuji Kuboyama; Tomoyuki Uchida (IWCIA, 2019)

Exact Learning of Primitive Formal Systems Defining Labeled Ordered Tree Languages via Queries. - Tomoyuki Uchida; Satoshi Matsumoto; Takayoshi Shoudai; Yusuke Suzuki; Tetsuhiro Miyahara (IEICE Trans. Inf. Syst., 2019)

An Efficient Learning Algorithm for Regular Pattern Languages Using One Positive Example and a Linear Number of Membership Queries. - Satoshi Matsumoto; Tomoyuki Uchida; Takayoshi Shoudai; Yusuke Suzuki; Tetsuhiro Miyahara (IEICE Trans. Inf. Syst., 2020)

Evolutionary Acquisition of Multiple TTSP Graph Patterns with Wildcards by Clustering TTSP Graphs. - Yuma Kawasaki; Tetsuhiro Miyahara; Tetsuji Kuboyama; Yusuke Suzuki; Tomoyuki Uchida (IWCIA, 2021)

Using Label Information in a Genetic Programming Based Method for Acquiring Tag Tree Patterns with Vertex Labels and Wildcards. - Shunsuke Yokoyama; Tetsuhiro Miyahara; Yusuke Suzuki; Tomoyuki Uchida; Tetsuji Kuboyama (IIAI-AAI-Winter, 2021)

Parameterized Formal Graph Systems and Their Polynomial-Time PAC Learnability. - Takayoshi Shoudai; Satoshi Matsumoto; Yusuke Suzuki; Tomoyuki Uchida; Tetsuhiro Miyahara (IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2023)