Identification of Person Objects in Four-Scenes Comics of Japanese Newspapers. - Tomoyuki Yamada; Toyohide Watanabe (GREC, 1999)

The Gene Resource Locator: gene locus maps for transcriptome analysis. - Toshihiko Honkura; Jun Ogasawara; Tomoyuki Yamada; Shinichi Morishita (Nucleic Acids Res., 2002)

Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently. - Tomoyuki Yamada; Shinichi Morishita (CSB, 2003)

Computing Highly Specific and Noise-tolerant Oligomers Efficiently. - Tomoyuki Yamada; Shinichi Morishita (J. Bioinform. Comput. Biol., 2004)

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference. - Yuki Naito; Tomoyuki Yamada; Kumiko Ui-Tei; Shinichi Morishita; Kaoru Saigo (Nucleic Acids Res., 2004)

Accelerated off-target search algorithm for siRNA. - Tomoyuki Yamada; Shinichi Morishita (Bioinform., 2005)

5'SAGE: 5'-end Serial Analysis of Gene Expression database. - Yasuhiro Kasai; Shin-ichi Hashimoto; Tomoyuki Yamada; Jun Sese; Sumio Sugano; Kouji Matsushima; Shinichi Morishita (Nucleic Acids Res., 2005)

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference. - Yuki Naito; Tomoyuki Yamada; Takahiro Matsumiya; Kumiko Ui-Tei; Kaoru Saigo; Shinichi Morishita (Nucleic Acids Res., 2005)

Acts of Commanding and Changing Obligations. - Tomoyuki Yamada (CLIMA, 2006)

Logical Dynamics of Commands and Obligations. - Tomoyuki Yamada (JSAI, 2006)

PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome. - Tomoyuki Yamada; Haruhiko Soma; Shinichi Morishita (Nucleic Acids Res., 2006)

Acts of Promising in Dynamified Deontic Logic. - Tomoyuki Yamada (JSAI, 2007)

UTGB/medaka: genomic resource database for medaka biology. - Budrul Ahsan; Daisuke Kobayashi; Tomoyuki Yamada; Masahiro Kasahara; Shin Sasaki; Taro L. Saito; Yukinobu Nagayasu; Koichiro Doi; Yoichiro Nakatani; Wei Qu; Tomoko Jindo; Atsuko Shimada; et al. (Nucleic Acids Res., 2008)

Logical dynamics of some speech acts that affect obligations and preferences. - Tomoyuki Yamada (Synth., 2008)

Dynamic Logic of Propositional Commitments. - Tomoyuki Yamada (Between Logic and Reality, 2012)

Term-Sequence-Modal Logics. - Takahiro Sawasaki; Katsuhiko Sano; Tomoyuki Yamada (LORI, 2019)

Acts of Commanding and Promising in Dynamified Common Sense Term-Sequence-Deontic-Alethic Logic. - Katsuhiko Sano; Tomoyuki Yamada (TLLM, 2022)