A Case Study of Software Process Improvement in a Chinese Small Company. - Beijun Shen; Tong Ruan (CSSE (2), 2008)

A Collaborative Car Auto-Navigation Framework Based on Intelligent Trajectory Mining. - Tong Ruan; Zhanquan Wang; Tao Song (IJCBS, 2009)

An Efficient Multi-Resolution Texture Synthesizing Method Based on Wavelet Transform. - Xin Zheng; Xiaodong Wang; Hai-feng Cui; Tong Ruan (J. Circuits Syst. Comput., 2009)

Mining at Most Top-K% Spatio-temporal Outlier Based Context: A Summary of Results. - Zhanquan Wang; Chunhua Gu; Tong Ruan; Chao Duan (AICI (2), 2011)

Automatic Web Information Extraction Based on Rules. - Fanghuai Hu; Tong Ruan; Zhiqing Shao; Jun Ding (WISE, 2011)

An Approach to Analyzing Time Constrained Service Composition. - Guisheng Fan; Huiqun Yu; Liqiong Chen; Tong Ruan (J. Comput., 2011)

Complete-Thread Extraction from Web Forums. - Fanghuai Hu; Tong Ruan; Zhiqing Shao (APWeb, 2012)

A Multi-strategy Learning Approach to Competitor Identification. - Tong Ruan; Yeli Lin; Haofen Wang; Jeff Z. Pan (JIST, 2014)

VKGBuilder - A Tool of Building and Exploring Vertical Knowledge Graphs. - Tong Ruan; Haofen Wang; Fanghuai Hu (ISWC (Posters & Demos), 2014)

Building and Exploring Marine Oriented Knowledge Graph for ZhouShan Library. - Tong Ruan; Haofen Wang; Fanghuai Hu; Jun Ding; Kai Lu (ISWC (Industry Track), 2014)

On Publishing Chinese Linked Open Schema. - Haofen Wang; Tianxing Wu 001; Guilin Qi; Tong Ruan (ISWC (1), 2014)

Evaluating and Comparing Web-Scale Extracted Knowledge Bases in Chinese and English. - Tong Ruan; Xu Dong; Haofen Wang; Yang Li (JIST, 2015)

Bootstrapping Yahoo! Finance by Wikipedia for Competitor Mining. - Tong Ruan; Lijuan Xue; Haofen Wang; Jeff Z. Pan (JIST, 2015)

KBMetrics - A Multi-purpose Tool for Measuring Quality of Linked Open Data Sets. - Tong Ruan; Xu Dong; Yang Li; Haofen Wang (ISWC (Posters & Demos), 2015)

Effective Online Knowledge Graph Fusion. - Haofen Wang; Zhijia Fang; Le Zhang; Jeff Z. Pan; Tong Ruan (ISWC (1), 2015)

Self-Supervised Synonym Extraction from the Web. - Fanghuai Hu; Zhiqing Shao; Tong Ruan (J. Inf. Sci. Eng., 2015)

From Queriability to Informativity, Assessing "Quality in Use" of DBpedia and YAGO. - Tong Ruan; Yang Li; Haofen Wang; Liang Zhao (ESWC, 2016)

Risk factors of heart failure for patients classification with extreme learning machine. - Huan-Huan Zhang; Peng-Cheng Wang; Ying-Jie Wang; Tong Ruan; Haofen Wang (ICMLC, 2016)

Zhishi.lemon: On Publishing Zhishi.me as Linguistic Linked Open Data. - Zhijia Fang; Haofen Wang; Jorge Gracia; Julia Bosque-Gil; Tong Ruan (ISWC (2), 2016)

Building and Exploring an Enterprise Knowledge Graph for Investment Analysis. - Tong Ruan; Lijuan Xue; Haofen Wang; Fanghuai Hu; Liang Zhao; Jun Ding (ISWC (2), 2016)

KCF.js: A Javascript Library for Knowledge Cards Fusion. - Haofen Wang; Zhijia Fang; Tong Ruan (WWW (Companion Volume), 2016)

BSBM+: Extending BSBM to Evaluate Annotated RDF Features on Graph Databases. - Le Zhang; Tong Ruan; Haofen Wang; Yuhang Xia; Qi Wang 020; Dong Xu (CCKS, 2017)

An automatic approach for constructing a knowledge base of symptoms in Chinese. - Tong Ruan; Mengjie Wang; Jian Sun; Ting Wang; Lu Zeng; Yichao Yin; Ju Gao (J. Biomed. Semant., 2017)

A novel learning algorithm of single-hidden-layer feedforward neural networks. - Dong-Mei Pu; Da-Qi Gao; Tong Ruan; Yubo Yuan 001 (Neural Comput. Appl., 2017)

Fast and Accurate Recognition of Chinese Clinical Named Entities with Residual Dilated Convolutions. - Jiahui Qiu; Qi Wang 020; Yangming Zhou; Tong Ruan; Ju Gao (BIBM, 2018)

Automatic Severity Classification of Coronary Artery Disease via Recurrent Capsule Network. - Qi Wang 020; Jiahui Qiu; Yangming Zhou; Tong Ruan; Daqi Gao; Ju Gao (BIBM, 2018)

An Attention-based BI-GRU-CapsNet Model for Hypernymy Detection between Compound Entities. - Qi Wang 020; Chenming Xu; Yangming Zhou; Tong Ruan; Daqi Gao; Ping He (BIBM, 2018)

Enterprise Workflow Modeling Based on Priced Timed Petri Nets. - Hong Zheng; Litian Li; Bozhi Wang; Tong Ruan (CSCloud/EdgeCom, 2018)

Recurrent Capsule Network for Relations Extraction: A Practical Application to the Severity Classification of Coronary Artery Disease. - Qi Wang 020; Jiahui Qiu; Yangming Zhou; Tong Ruan; Daqi Gao; Ju Gao (CoRR, 2018)

PatientEG Dataset: Bringing Event Graph Model with Temporal Relations to Electronic Medical Records. - Xuli Liu; Jihao Jin; Qi Wang 020; Tong Ruan; Yangming Zhou; Daqi Gao; Yichao Yin (CoRR, 2018)

Mortality prediction system for heart failure with orthogonal relief and dynamic radius means. - Zhe Wang 002; Lijuan Yao; Dongdong Li; Tong Ruan; Min Liu; Ju Gao (Int. J. Medical Informatics, 2018)

On Evaluating Web-Scale Extracted Knowledge Bases in a Comparative Way. - Tong Ruan; Liang Zhao; Yang Li; Haofen Wang; Xu Dong (Int. J. Semantic Web Inf. Syst., 2018)

On building and publishing Linked Open Schema from social Web sites. - Tianxing Wu 001; Haofen Wang; Guilin Qi; Jiangang Zhu; Tong Ruan (J. Web Semant., 2018)

Question Answering based Clinical Text Structuring Using Pre-trained Language Model. - Jiahui Qiu; Yangming Zhou; Zhiyuan Ma 001; Tong Ruan; Jinlin Liu; Jing Sun (BIBM, 2019)

Fine-tuning BERT for Joint Entity and Relation Extraction in Chinese Medical Text. - Kui Xue; Yangming Zhou; Zhiyuan Ma 001; Tong Ruan; Huanhuan Zhang; Ping He (BIBM, 2019)

Another Dimension: Towards Multi-subnet Neural Network for Image Sentiment Analysis. - Jing Zhang 041; Han Sun; Zhe Wang 002; Tong Ruan (ICME, 2019)

Question Answering based Clinical Text Structuring Using Pre-trained Language Model. - Jiahui Qiu; Yangming Zhou; Zhiyuan Ma; Tong Ruan; Jinlin Liu; Jing Sun (CoRR, 2019)

Incorporating dictionaries into deep neural networks for the Chinese clinical named entity recognition. - Qi Wang 020; Yangming Zhou; Tong Ruan; Daqi Gao; Yuhang Xia; Ping He (J. Biomed. Informatics, 2019)

数据集分类可用性评估的置信区间方法 (Confidence Interval Method for Classification Usability Evaluation of Data Sets). - Xuntao Tan; Yiyi Gu; Tong Ruan; Yubo Yuan 001 (计算机科学, 2019)

QAnalysis: a question-answer driven analytic tool on knowledge graphs for leveraging electronic medical records for clinical research. - Tong Ruan; Yueqi Huang; Xuli Liu; Yuhang Xia; Ju Gao (BMC Medical Informatics Decis. Mak., 2019)

Representation learning for clinical time series prediction tasks in electronic health records. - Tong Ruan; Liqi Lei; Yangming Zhou; Jie Zhai; Le Zhang; Ping He; Ju Gao (BMC Medical Informatics Decis. Mak., 2019)

融入语言模型和注意力机制的临床电子病历命名实体识别 (Clinical Electronic Medical Record Named Entity Recognition Incorporating Language Model and Attention Mechanism). - Guoqiang Tang; Daqi Gao; Tong Ruan; Qi Ye; Qi Wang 020 (计算机科学, 2020)

Lab indicators standardization method for the regional healthcare platform: a case study on heart failure. - Ming Liang; Zhixing Zhang; Jiaying Zhang; Tong Ruan; Qi Ye; Ping He (BMC Medical Informatics Decis. Mak., 2020)

An Integrated Resampling Methods for Imbalanced Sporadic Temporal Data in EHRs. - Qi Ye; Tomohiro Kuroda; Tong Ruan; Wenlong Zhang; Xiaoling Ge (BIBM, 2021)

LR-BCA: Label Ranking for Bridge Condition Assessment. - Kai Wang; Tong Ruan; Faxiang Xie (IEEE Access, 2021)

A combined recall and rank framework with online negative sampling for Chinese procedure terminology normalization. - Ming Liang; Kui Xue; Qi Ye; Tong Ruan (Bioinform., 2021)

A multi-perspective combined recall and rank framework for Chinese procedure terminology normalization. - Ming Liang; Kui Xue; Tong Ruan (CoRR, 2021)

DoTAT: A Domain-oriented Text Annotation Tool. - Yupian Lin; Tong Ruan; Ming Liang; Tingting Cai; Wen Du; Yi Wang (ACL (demo), 2022)

Prompt-based Generative Approach towards Multi-Hierarchical Medical Dialogue State Tracking. - Jun Liu 002; Tong Ruan; Haofen Wang; Huanhuan Zhang (CoRR, 2022)

FL-Tuning: Layer Tuning for Feed-Forward Network in Transformer. - Jingping Liu; Yuqiu Song; Kui Xue; Hongli Sun; Chao Wang 095; Lihan Chen; Haiyun Jiang; Jiaqing Liang; Tong Ruan (CoRR, 2022)

CBEAF-Adapting: Enhanced Continual Pretraining for Building Chinese Biomedical Language Model. - Yongyu Yan; Kui Xue; Qi Ye; Tong Ruan (CoRR, 2022)

AF Adapter: Continual Pretraining for Building Chinese Biomedical Language Model. - Yongyu Yan; Kui Xue; Xiaoming Shi; Qi Ye; Jingping Liu; Tong Ruan (BIBM, 2023)

MMpedia: A Large-Scale Multi-modal Knowledge Graph. - Yinan Wu; Xiaowei Wu; Junwen Li; Yue Zhang; Haofen Wang; Wen Du; Zhidong He; Jingping Liu; Tong Ruan (ISWC, 2023)

MA-MRC: A Multi-answer Machine Reading Comprehension Dataset. - Zhiang Yue; Jingping Liu; Cong Zhang; Chao Wang 095; Haiyun Jiang; Yue Zhang 004; Xianyang Tian; Zhedong Cen; Yanghua Xiao; Tong Ruan (SIGIR, 2023)

LLM-Mini-CEX: Automatic Evaluation of Large Language Model for Diagnostic Conversation. - Xiaoming Shi; Jie Xu; Jinru Ding; Jiali Pang; Sichen Liu 005; Shuqing Luo; Xingwei Peng; Lu Lu; Haihong Yang; Mingtao Hu; Tong Ruan; Shaoting Zhang 001 (CoRR, 2023)

MedDM: LLM-executable clinical guidance tree for clinical decision-making. - Binbin Li; Tianxin Meng; Xiaoming Shi; Jie Zhai; Tong Ruan (CoRR, 2023)

ST-Unet: Swin Transformer boosted U-Net with Cross-Layer Feature Enhancement for medical image segmentation. - Jing Zhang 041; Qiuge Qin; Qi Ye; Tong Ruan (Comput. Biol. Medicine, 2023)

A co-adaptive duality-aware framework for biomedical relation extraction. - Weiyan Zhang; Chuang Chen; Jiacheng Wang; Jingping Liu; Tong Ruan (Bioinform., 2023)

Integration of multiple terminology bases: a multi-view alignment method using the hierarchical structure. - Peihong Hu; Qi Ye; Weiyan Zhang; Jingping Liu; Tong Ruan (Bioinform., 2023)

Subsequence and distant supervision based active learning for relation extraction of Chinese medical texts. - Qi Ye; Tingting Cai; Xiang Ji; Tong Ruan; Hong Zheng (BMC Medical Informatics Decis. Mak., 2023)

RRNorm: A Novel Framework for Chinese Disease Diagnoses Normalization via LLM-Driven Terminology Component Recognition and Reconstruction. - Yongqi Fan; Yansha Zhu; Kui Xue; Jingping Liu; Tong Ruan (ACL (Findings), 2024)

Medical Dialogue System: A Survey of Categories, Methods, Evaluation and Challenges. - Xiaoming Shi; Zeming Liu; Li Du; Yuxuan Wang 001; Hongru Wang 003; Yuhang Guo 001; Tong Ruan; Jie Xu; Xiaofan Zhang 002; Shaoting Zhang 001 (ACL (Findings), 2024)

Unexpected Phenomenon: LLMs' Spurious Associations in Information Extraction. - Weiyan Zhang; Wanpeng Lu; Jiacheng Wang; Yating Wang; Lihan Chen; Haiyun Jiang; Jingping Liu; Tong Ruan (ACL (Findings), 2024)

Alignment of Chinese-English Medical Terminology in Small-Sample Scenarios: A Two-Stage Approach. - Qi Ye; Zicheng Yao; Peihong Hu; Xiang Ji; Tong Ruan; Ruihui Hou (BIBM, 2024)

Knowledge-Routed Automatic Diagnosis With Heterogeneous Patient-Oriented Graph. - Zhiang Li; Tong Ruan (IEEE Access, 2024)

MedBench: A Comprehensive, Standardized, and Reliable Benchmarking System for Evaluating Chinese Medical Large Language Models. - Mianxin Liu; Weiguo Hu; Jinru Ding; Jie Xu; Xiaoyang Li; Lifeng Zhu; Zhian Bai; Xiaoming Shi; Benyou Wang; Haitao Song 001; Pengfei Liu 003; Xiaofan Zhang 002; et al. (Big Data Min. Anal., 2024)

Scale-wise discriminative region learning for medical image segmentation. - Jing Zhang 041; Xiaoting Lai; Hai Yang 002; Tong Ruan (Biomed. Signal Process. Control., 2024)

OpenMEDLab: An Open-source Platform for Multi-modality Foundation Models in Medicine. - Xiaosong Wang 001; Xiaofan Zhang 002; Guotai Wang; Junjun He; Zhongyu Li 002; Wentao Zhu 001; Yi Guo 002; Qi Dou 001; Xiaoxiao Li; Dequan Wang; Liang Hong; Qicheng Lao; et al. (CoRR, 2024)

Tool Calling: Enhancing Medication Consultation via Retrieval-Augmented Large Language Models. - Zhongzhen Huang; Kui Xue; Yongqi Fan; Linjie Mu; Ruoyu Liu; Tong Ruan; Shaoting Zhang 001; Xiaofan Zhang 002 (CoRR, 2024)

Medical Dialogue: A Survey of Categories, Methods, Evaluation and Challenges. - Xiaoming Shi; Zeming Liu; Li Du; Yuxuan Wang 001; Hongru Wang 003; Yuhang Guo 001; Tong Ruan; Jie Xu; Shaoting Zhang 001 (CoRR, 2024)

MSDiagnosis: An EMR-based Dataset for Clinical Multi-Step Diagnosis. - Ruihui Hou; Shencheng Chen; Yongqi Fan; Lifeng Zhu; Jing Sun; Jingping Liu; Tong Ruan (CoRR, 2024)

GC-CDSS: Personalized gastric cancer treatment recommendations system based on knowledge graph. - Shuchun Li; Zhiang Li; Kui Xue; Xueliang Zhou; Chengsheng Ding; Yanfei Shao; Sen Zhang; Tong Ruan; Minhua Zheng; Jing Sun (Int. J. Medical Informatics, 2024)

Enhancing Chinese abbreviation prediction with LLM generation and contrastive evaluation. - Jingping Liu; Xianyang Tian; Hanwen Tong; Chenhao Xie 002; Tong Ruan; Lin Cong; Baohua Wu; Haofen Wang (Inf. Process. Manag., 2024)

A multi-view representation learning framework for commonsense knowledge bases. - Weiyan Zhang; Chuang Chen; Tao Chen; Jingping Liu; Qi Ye; Tong Ruan (Inf. Sci., 2024)

A Survey on Neural Data-to-Text Generation. - Yupian Lin; Tong Ruan; Jingping Liu; Haofen Wang (IEEE Trans. Knowl. Data Eng., 2024)

A Bidirectional Extraction-Then-Evaluation Framework for Complex Relation Extraction. - Weiyan Zhang; Jiacheng Wang; Chuang Chen; Wanpeng Lu; Wen Du; Haofen Wang; Jingping Liu; Tong Ruan (IEEE Trans. Knowl. Data Eng., 2024)

IMQC: A Large Language Model Platform for Medical Quality Control. - Qi Ye; Guangya Yu; Jingping Liu; Erzhen Chen; Chenjie Dong; Xiaosheng Lin; Zelei Liu; Han Yu 001; Tong Ruan (AAAI, 2025)

EMRs2CSP : Mining Clinical Status Pathway from Electronic Medical Records. - Yifei Chen; Ruihui Hou; Jingping Liu; Tong Ruan (ACL (Findings), 2025)

MinosEval: Distinguishing Factoid and Non-Factoid for Tailored Open-Ended QA Evaluation with LLMs. - Yongqi Fan; Yating Wang; Guandong Wang; Jie Zhai; Jingping Liu; Qi Ye; Tong Ruan (ACL (Findings), 2025)

Can Multimodal Large Language Models Understand Spatial Relations? - Jingping Liu; Ziyan Liu; Zhedong Cen; Yan Zhou; Yinan Zou; Weiyan Zhang; Haiyun Jiang; Tong Ruan (ACL (1), 2025)

Text-to-ES Bench: A Comprehensive Benchmark for Converting Natural Language to Elasticsearch Query. - Dongge Xue; Zhili Pu; Zhentao Xia; Hongli Sun; Ruihui Hou; Guangya Yu; Yupian Lin; Yongqi Fan; Jingping Liu; Tong Ruan (ACL (1), 2025)

CMQCIC-Bench: A Chinese Benchmark for Evaluating Large Language Models in Medical Quality Control Indicator Calculation. - Guangya Yu; Yanhao Li; Zongying Jiang; Yuxiong Jin; Li Dai; Yupian Lin; Ruihui Hou; Weiyan Zhang; Yongqi Fan; Qi Ye; Jingping Liu; Tong Ruan (ACL (Findings), 2025)

PToco: Prefix-based Token-level Collaboration Enhances Reasoning for Multi-LLMs. - Yuang Bian; Yupian Lin; Jingping Liu; Tong Ruan (COLING, 2025)

An LLM-based Framework for Biomedical Terminology Normalization in Social Media via Multi-Agent Collaboration. - Yongqi Fan; Kui Xue; Zelin Li 004; Xiaofan Zhang 002; Tong Ruan (COLING, 2025)

MedOdyssey: A Medical Domain Benchmark for Long Context Evaluation Up to 200K Tokens. - Yongqi Fan; Hongli Sun; Kui Xue; Xiaofan Zhang 002; Shaoting Zhang 001; Tong Ruan (NAACL (Findings), 2025)

MedEureka: A Medical Domain Benchmark for Multi-Granularity and Multi-Data-Type Embedding-Based Retrieval. - Yongqi Fan; Nan Wang; Kui Xue; Jingping Liu; Tong Ruan (NAACL (Findings), 2025)

Towards Explainable Search Results in E-commerce. - Xianyang Tian; Xiang Xu; Chao Wang 095; Tong Ruan; Baohua Wu; Maofei Que; Shenghua Ni; Zhuoran Zhuang; Jingping Liu (WWW (Companion Volume), 2025)

MKGF: A multi-modal knowledge graph based RAG framework to enhance LVLMs for Medical visual question answering. - Yinan Wu; Yuming Lu; Yan Zhou; Yifan Ding; Jingping Liu; Tong Ruan (Neurocomputing, 2025)

Decision Tree Extraction for Clinical Decision Support System With If-Else Pseudocode and PlanSelect Strategy. - Ruihui Hou; Xiaojun Wang; Weiyan Zhang; Zhexin Song; Kai Wang; Yifei Chen; Jingping Liu; Tong Ruan (IEEE J. Biomed. Health Informatics, 2025)

LCDS: A Logic-Controlled Discharge Summary Generation System Supporting Source Attribution and Expert Review. - Cheng Yuan; Xinkai Rui; Yongqi Fan; Yawei Fan; Boyang Zhong; Jiacheng Wang; Weiyan Zhang; Tong Ruan (CoRR, 2025)

I2CR: Intra- and Inter-modal Collaborative Reflections for Multimodal Entity Linking. - Ziyan Liu; Junwen Li; Kaiwen Li; Tong Ruan; Chao Wang; Xinyan He; Zongyu Wang; Xuezhi Cao; Jingping Liu (CoRR, 2025)

TFRank: Think-Free Reasoning Enables Practical Pointwise LLM Ranking. - Yongqi Fan; Xiaoyang Chen; Dezhi Ye; Jie Liu; Haijin Liang; Jin Ma; Ben He; Yingfei Sun; Tong Ruan (CoRR, 2025)

KG-o1: Enhancing Multi-hop Question Answering in Large Language Models via Knowledge Graph Integration. - Nan Wang; Yongqi Fan; Yansha Zhu; ZongYu Wang; Xuezhi Cao; Xinyan He; Haiyun Jiang; Tong Ruan; Jingping Liu (CoRR, 2025)