All-Atom Knowledge-Based Potential for RNA Structure Discrimination Based on the Distance-Scaled Finite Ideal-Gas Reference State. - Tongchuan Zhang; Guodong Hu; Yuedong Yang; Jihua Wang; Yaoqi Zhou (J. Comput. Biol., 2020)

Improved RNA secondary structure and tertiary base-pairing prediction using evolutionary profile, mutational coupling and two-dimensional transfer learning. - Jaswinder Singh; Kuldip K. Paliwal; Tongchuan Zhang; Jaspreet Singh; Thomas Litfin; Yaoqi Zhou (Bioinform., 2021)

RNAcmap: a fully automatic pipeline for predicting contact maps of RNAs by evolutionary coupling analysis. - Tongchuan Zhang; Jaswinder Singh; Thomas Litfin; Jian Zhan; Kuldip K. Paliwal; Yaoqi Zhou (Bioinform., 2021)