ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression. - Helen E. Parkinson; Misha Kapushesky; Nikolay Kolesnikov; Gabriella Rustici; Mohammadreza Shojatalab; Niran Abeygunawardena; Hugo Bérubé; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Ele Holloway; Margus Lukk; et al. (Nucleic Acids Res., 2009)

Annotare - a tool for annotating high-throughput biomedical investigations and resulting data. - Ravi Shankar; Helen E. Parkinson; Tony Burdett; Emma Hastings; Junmin Liu; Michael Miller 001; Rashmi Srinivasa; Joseph White; Alvis Brazma; Gavin Sherlock; Christian J. Stoeckert Jr.; Catherine A. Ball (Bioinform., 2010)

Anatomy ontologies and potential users: bridging the gap. - Ravensara S. Travillian; Tomasz Adamusiak; Tony Burdett; Michael Gruenberger; John M. Hancock; Ann-Marie Mallon; James Malone; Paul N. Schofield; Helen E. Parkinson (J. Biomed. Semant., 2011)

OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript. - Tomasz Adamusiak; Tony Burdett; Natalja Kurbatova; K. Joeri van der Velde; Niran Abeygunawardena; Despoina Antonakaki; Misha Kapushesky; Helen E. Parkinson; Morris A. Swertz (BMC Bioinform., 2011)

ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments. - Helen E. Parkinson; Ugis Sarkans; Nikolay Kolesnikov; Niran Abeygunawardena; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Ele Holloway; Natalja Kurbatova; Margus Lukk; et al. (Nucleic Acids Res., 2011)

GOCI: An Ontology-Driven Search and Curation Infrastructure for the NHGRI GWAS Catalog. - Danielle Welter; Tony Burdett; Lucia Hindorff; Heather Junkins; Jackie MacArthur; Helen E. Parkinson (ICBO, 2012)

MageComet - web application for harmonizing existing large-scale experiment descriptions. - Vincent Xue; Tony Burdett; Margus Lukk; Julie Taylor; Alvis Brazma; Helen E. Parkinson (Bioinform., 2012)

Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments. - Misha Kapushesky; Tomasz Adamusiak; Tony Burdett; Aedín C. Culhane; Anna Farne; Alexey Filippov; Ele Holloway; Andrey Klebanov; Nataliya Kryvych; Natalja Kurbatova; Pavel Kurnosov; James Malone; et al. (Nucleic Acids Res., 2012)

Putting OWL into Production at the European Bioinformatics Institute. - James Malone; Tony Burdett; Jon C. Ison; Simon Jupp; Drashtti Vasant; Danielle Welter; Helen E. Parkinson (OWLED, 2013)

ArrayExpress update - trends in database growth and links to data analysis tools. - Gabriella Rustici; Nikolay Kolesnikov; Marco Brandizi; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Jon C. Ison; Maria Keays; Natalja Kurbatova; James Malone; et al. (Nucleic Acids Res., 2013)

Updates to BioSamples database at European Bioinformatics Institute. - Adam Faulconbridge; Tony Burdett; Marco Brandizi; Mikhail Gostev; Rui Pedro Pereira; Drashtti Vasant; Ugis Sarkans; Alvis Brazma; Helen E. Parkinson (Nucleic Acids Res., 2014)

Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. - Robert Petryszak; Tony Burdett; Benedetto Fiorelli; Nuno A. Fonseca; Mar Gonzalez-Porta; Emma Hastings; Wolfgang Huber; Simon Jupp; Maria Keays; Nataliya Kryvych; Julie A. McMurry; John C. Marioni; et al. (Nucleic Acids Res., 2014)

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. - Danielle Welter; Jacqueline A. L. MacArthur; Joannella Morales; Tony Burdett; Peggy Hall; Heather Junkins; Alan Klemm; Paul Flicek; Teri Manolio; Lucia Hindorff; Helen E. Parkinson (Nucleic Acids Res., 2014)

A new Ontology Lookup Service at EMBL-EBI. - Simon Jupp; Tony Burdett; Catherine Leroy; Helen E. Parkinson (SWAT4LS, 2015)

Collaborative Ontology Development Using the Webulous Architecture and Google App. - Simon Jupp; Danielle Welter; Tony Burdett; Helen E. Parkinson; James Malone (SWAT4LS, 2015)

ArrayExpress update - simplifying data submissions. - Nikolay Kolesnikov; Emma Hastings; Maria Keays; Olga Melnichuk; Y. Amy Tang; Eleanor Williams; Miroslaw Dylag; Natalja Kurbatova; Marco Brandizi; Tony Burdett; Karyn Megy; Ekaterina Pilicheva; et al. (Nucleic Acids Res., 2015)

Biomedical Ontology Evolution in the EMBL-EBI Ontology Lookup Service. - Olga Vrousgou; Tony Burdett; Helen E. Parkinson; Simon Jupp (EDBT/ICDT Workshops, 2016)

Updates from the EMBL-EBI RDF platform. - Thomas Liener; Tony Burdett; Simon Jupp (SWAT4LS, 2016)

PhenoImageShare: an image annotation and query infrastructure. - Solomon Adebayo; Kenneth McLeod; Ilinca Tudose; David Osumi-Sutherland; Tony Burdett; Richard A. Baldock; Albert Burger; Helen E. Parkinson (J. Biomed. Semant., 2016)

Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates. - Simon Jupp; Tony Burdett; Danielle Welter; Sirarat Sarntivijai; Helen E. Parkinson; James Malone (J. Biomed. Semant., 2016)

The cellular microscopy phenotype ontology. - Simon Jupp; James Malone; Tony Burdett; Jean-Karim Hériché; Eleanor Williams; Jan Ellenberg; Helen E. Parkinson; Gabriella Rustici (J. Biomed. Semant., 2016)

Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants. - Robert Petryszak; Maria Keays; Y. Amy Tang; Nuno A. Fonseca; Elisabet Barrera; Tony Burdett; Anja Füllgrabe; Alfonso Muñoz-Pomer Fuentes; Simon Jupp; Satu Koskinen; Oliver Mannion; Laura Huerta; et al. (Nucleic Acids Res., 2016)

OxO - A Gravy of Ontology Mapping Extracts. - Simon Jupp; Thomas Liener; Sirarat Sarntivijai; Olga Vrousgou; Tony Burdett; Helen E. Parkinson (ICBO, 2017)

Open Targets: a platform for therapeutic target identification and validation. - Gautier Koscielny; Peter An; Denise Carvalho-Silva; Jennifer A. Cham; Luca Fumis; Rippa Gasparyan; Samiul Hasan; Nikiforos Karamanis; Michael Maguire; Eliseo Papa; Andrea Pierleoni; Miguel Pignatelli; et al. (Nucleic Acids Res., 2017)

The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). - Jacqueline A. L. MacArthur; Emily Bowler; Maria Cerezo; Laurent Gil; Peggy Hall; Emma Hastings; Heather Junkins; Aoife McMahon; Annalisa Milano; Joannella Morales; Zoë May Pendlington; Danielle Welter; et al. (Nucleic Acids Res., 2017)

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019. - Annalisa Buniello; Jacqueline A. L. MacArthur; Maria Cerezo; Laura W. Harris; James D. Hayhurst; Cinzia Malangone; Aoife McMahon; Joannella Morales; Edward Mountjoy; Elliot Sollis; Daniel Suveges; Olga Vrousgou; et al. (Nucleic Acids Res., 2019)

BioSamples database: an updated sample metadata hub. - Mélanie Courtot; Luca Cherubin; Adam Faulconbridge; Daniel Vaughan; Matthew Green 005; David Richardson; Peter W. Harrison; Patricia L. Whetzel; Helen E. Parkinson; Tony Burdett (Nucleic Acids Res., 2019)

The European Nucleotide Archive in 2019. - Clara Amid; Blaise T. F. Alako; Vishnukumar Balavenkataraman Kadhirvelu; Tony Burdett; Josephine Burgin; Jun Fan; Peter W. Harrison; Sam Holt; Abdulrahman Hussein; Eugene Ivanov; Suran Jayathilaka; Simon Kay; et al. (Nucleic Acids Res., 2020)

Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics. - Maya Ghoussaini; Edward Mountjoy; Miguel Carmona; Gareth Peat; Ellen M. Schmidt; Andrew Hercules; Luca Fumis; Alfredo Miranda; Denise Carvalho-Silva; Annalisa Buniello; Tony Burdett; James D. Hayhurst; et al. (Nucleic Acids Res., 2021)

The European Nucleotide Archive in 2020. - Peter W. Harrison; Alisha Ahamed; Raheela Aslam; Blaise T. F. Alako; Josephine Burgin; Nicola Buso; Mélanie Courtot; Jun Fan; Dipayan Gupta; Muhammad Haseeb; Sam Holt; Talal Ibrahim; et al. (Nucleic Acids Res., 2021)

ELIXIR biovalidator for semantic validation of life science metadata. - Isuru Udara Liyanage; Tony Burdett; Bert Droesbeke; Karoly Erdos; Rolando Fernandez; Alasdair J. G. Gray; Muhammad Haseeb; Simon Jupp; Flavia Penim; Cyril Pommier; Philippe Rocca-Serra; Mélanie Courtot; et al. (Bioinform., 2022)

BioSamples database: FAIRer samples metadata to accelerate research data management. - Mélanie Courtot; Dipayan Gupta; Isuru Udara Liyanage; Fuqi Xu; Tony Burdett (Nucleic Acids Res., 2022)

The European Nucleotide Archive in 2021. - Carla A. Cummins; Alisha Ahamed; Raheela Aslam; Josephine Burgin; Rajkumar Devraj; Ossama Edbali; Dipayan Gupta; Peter W. Harrison; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; et al. (Nucleic Acids Res., 2022)

Expression Atlas update: gene and protein expression in multiple species. - Pablo A. Moreno; Silvie Fexova; Nancy George; Jonathan R. Manning; Zhichao Miao; Suhaib Mohammed; Alfonso Muñoz-Pomer Fuentes; Anja Füllgrabe; Yalan Bi; Natassja Bush; Haider Iqbal; Upendra Kumbham; et al. (Nucleic Acids Res., 2022)

The European Nucleotide Archive in 2022. - Josephine Burgin; Alisha Ahamed; Carla A. Cummins; Rajkumar Devraj; Khadim Gueye; Dipayan Gupta; Vikas Gupta; Muhammad Haseeb; Maira Ihsan; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; et al. (Nucleic Acids Res., 2023)

MGnify: the microbiome sequence data analysis resource in 2023. - Lorna J. Richardson; Ben Allen; Germana Baldi; Martin Beracochea; Maxwell L. Bileschi; Tony Burdett; Josephine Burgin; Juan Caballero; Guy Cochrane; Lucy J. Colwell; Tom Curtis; Alejandra Escobar-Zepeda; et al. (Nucleic Acids Res., 2023)