Motif kernel generated by genetic programming improves remote homology and fold detection. - Tony Håndstad; Arne J. H. Hestnes; Pål Sætrom (BMC Bioinform., 2007)

The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding. - Karl Kornacker; Morten Rye; Tony Håndstad; Finn Drabløs (BMC Bioinform., 2012)

On Improving the Phenotype Acquisition Process Using Semantic Web Technology. - Ernesto Jiménez-Ruiz; Dag Hovland; Laura Slaughter; Tony Håndstad; Arild Waaler (SWAT4LS, 2017)