TE-Tracker: systematic identification of transposition events through whole-genome resequencing. - Arthur Gilly; Mathilde Etcheverry; Mohammed-Amin Madoui; Julie Guy; Leandro Quadrana; Adriana Alberti; Antoine Martin; Tony Heitkam; Stefan Engelen; Karine Labadie; Jeremie Le Pen; Patrick Wincker; et al. (BMC Bioinform., 2014)

FlexiDot: highly customizable, ambiguity-aware dotplots for visual sequence analyses. - Kathrin M. Seibt; Thomas Schmidt; Tony Heitkam (Bioinform., 2018)

ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data. - Ludwig Mann; Kathrin M. Seibt; Beatrice Weber; Tony Heitkam (BMC Bioinform., 2022)