Protein Structure Prediction with Visuospatial Analogy. - Jim Davies; Janice I. Glasgow; Tony Kuo (Spatial Cognition, 2006)

Visio-Spatial Case-Based Reasoning: A Case Study in Prediction of Protein Structure. - Jim Davies; Janice I. Glasgow; Tony Kuo (Comput. Intell., 2006)

Protein Structure from Contact Maps: A Case-Based Reasoning Approach. - Janice I. Glasgow; Tony Kuo; Jim Davies (Inf. Syst. Frontiers, 2006)

A Computational Approach to Predicting Distance Maps from Contact Maps. - Tony Kuo (2012)

Predicting helix pair structure from fuzzy contact maps. - Tony Kuo; Janice I. Glasgow (Appl. Soft Comput., 2014)

CRED: a rapid peak caller for Chem-seq data. - Jason Lin; Tony Kuo; Paul Horton; Hiroki Nagase (J. Open Source Softw., 2019)

Intraprocedure Artificial Intelligence Alert System for Colonoscopy Examination. - Chen-Ming Hsu; Chien-Chang Hsu; Zhe-Ming Hsu; Tsung-Hsing Chen; Tony Kuo (Sensors, 2023)

Learning Multi-cellular Representations of Single-Cell Transcriptomics Data Enables Characterization of Patient-Level Disease States. - Tianyu Liu 001; Edward De Brouwer; Tony Kuo; Nathaniel Diamant; Alsu Missarova; Hanchen Wang 002; Minsheng Hao; Héctor Corrada Bravo; Gabriele Scalia; Aviv Regev; Graham Heimberg (RECOMB, 2025)