Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications. - Shannon Hastings; Tahsin M. Kurç; Stephen Langella; Ümit V. Çatalyürek; Tony Pan; Joel H. Saltz (CCGRID, 2003)

Serving queries to multi-resolution datasets on disk-based storage clusters. - Xi Zhang; Tony Pan; Ümit V. Çatalyürek; Tahsin M. Kurç; Joel H. Saltz (CCGRID, 2004)

Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data. - Matheus Ribeiro; Tahsin M. Kurç; Tony Pan; Kun Huang 001; Ümit V. Çatalyürek; Xi Zhang; Stephen Langella; Shannon Hastings; Scott Oster; Renato Ferreira 001; Joel H. Saltz (High Performance Computing Workshop, 2004)

Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms. - Xi Zhang; Tahsin M. Kurç; Tony Pan; Ümit V. Çatalyürek; Sivaramakrishnan Narayanan; Pete Wyckoff; Joel H. Saltz (HPDC, 2004)

Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying. - Benjamin Rutt; Vijay S. Kumar; Tony Pan; Tahsin M. Kurç; Ümit V. Çatalyürek; Joel H. Saltz; Yujun Wang (CLUSTER, 2005)

Supporting Large Scale Medical and Scientific Datasets. - Ümit V. Çatalyürek; Shannon Hastings; Kun Huang 001; Vijay S. Kumar; Tahsin M. Kurç; Stephen Langella; Sivaramakrishnan Narayanan; Scott Oster; Tony Pan; Benjamin Rutt; Xi Zhang; Joel H. Saltz (PARCO, 2005)

Grid-based management of biomedical data using an XML-based distributed data management system. - Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Tony Pan; Ümit V. Çatalyürek; Daniel Janies; Joel H. Saltz (SAC, 2005)

Application of Information Technology: A Grid-Based Image Archival and Analysis System. - Shannon Hastings; Scott Oster; Stephen Langella; Tahsin M. Kurç; Tony Pan; Ümit V. Çatalyürek; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2005)

XML database support for distributed execution of data-intensive scientific workflows. - Shannon Hastings; Matheus Ribeiro; Stephen Langella; Scott Oster; Ümit V. Çatalyürek; Tony Pan; Kun Huang 001; Renato Ferreira 001; Joel H. Saltz; Tahsin M. Kurç (SIGMOD Rec., 2005)

Image Analysis for Neuroblastoma Classification: Segmentation of Cell Nuclei. - Metin N. Gurcan; Tony Pan; Hiroyuki Shimada; Joel H. Saltz (EMBC, 2006)

Service-Based Access to and Processing of Large Scientific Datasets. - Ümit V. Çatalyürek; Sivaramakrishnan Narayanan; Olcay Sertel; Jun Kong 002; Berkant Barla Cambazoglu; Tony Pan; Ashish Sharma 001; Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Metin Nafi Gürcan; et al. (High Performance Computing Workshop, 2006)

Automatic registration of large set of microscopic images using high-level features. - Jeff Prescott; Matthew Clary; Gregory J. Wiet; Tony Pan; Kun Huang 001 (ISBI, 2006)

Registration and 3D visualization of large microscopy images. - Kishore Mosaliganti; Tony Pan; Richard Sharp; Randall Ridgway; Srivathsan Iyengar; Alexandra Gulacy; Pamela Wenzel; Alain de Bruin; Raghu Machiraju; Kun Huang 001; Gustavo Leone; Joel H. Saltz (Image Processing, 2006)

The GPU on biomedical image processing for color and phenotype analysis. - Antonio Ruiz; Manuel Ujaldon; Jose Antonio Andrades; Jose Becerra; Kun Huang 001; Tony Pan; Joel H. Saltz (BIBE, 2007)

Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. - Richard Sharp; Randall Ridgway; Kishore Mosaliganti; Pamela Wenzel; Tony Pan; Alain de Bruin; Raghu Machiraju; Kun Huang 001; Gustavo Leone; Joel H. Saltz (Comput. Sci. Eng., 2007)

GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support. - Metin N. Gurcan; Tony Pan; Ashish Sharma 001; Tahsin M. Kurç; Scott Oster; Stephen Langella; Shannon Hastings; Khan M. Siddiqui; Eliot L. Siegel; Joel H. Saltz (J. Digit. Imaging, 2007)

A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. - Joel H. Saltz; Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Philip R. O. Payne; Renato Ferreira 001; Beth Plale; Carole A. Goble; David Ervin; Ashish Sharma 001; Tony Pan; et al. (HealthGrid, 2008)

Translational research design templates, Grid computing, and HPC. - Joel H. Saltz; Scott Oster; Shannon Hastings; Stephen Langella; Renato Ferreira 001; Justin Permar; Ashish Sharma 001; David Ervin; Tony Pan; Ümit V. Çatalyürek; Tahsin M. Kurç (IPDPS, 2008)

e-Science, caGrid, and Translational Biomedical Research. - Joel H. Saltz; Tahsin M. Kurç; Shannon Hastings; Stephen Langella; Scott Oster; David Ervin; Ashish Sharma 001; Tony Pan; Metin N. Gurcan; Justin Permar; Renato Ferreira 001; Philip R. O. Payne; et al. (Computer, 2008)

A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. - George Teodoro; Tulio Tavares; Renato Ferreira 001; Tahsin M. Kurç; Wagner Meira Jr.; Dorgival Olavo Guedes Neto; Tony Pan; Joel H. Saltz (Int. J. Parallel Program., 2008)

Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment. - Stephen Langella; Shannon Hastings; Scott Oster; Tony Pan; Ashish Sharma 001; Justin Permar; David Ervin; Berkant Barla Cambazoglu; Tahsin M. Kurç; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2008)

An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. - Kishore Mosaliganti; Tony Pan; Randall Ridgway; Richard Sharp; Lee Cooper 001; Alex Gulacy; Ashish Sharma 001; M. Okan Irfanoglu; Raghu Machiraju; Tahsin M. Kurç; Alain de Bruin; Pamela Wenzel; et al. (J. Biomed. Informatics, 2008)

Large-Scale Biomedical Image Analysis in Grid Environments. - Vijay S. Kumar; Benjamin Rutt; Tahsin M. Kurç; Ümit V. Çatalyürek; Tony C. Pan; Sunny K. Chow; Stephan Lamont; Maryann E. Martone; Joel H. Saltz (IEEE Trans. Inf. Technol. Biomed., 2008)

HPC and Grid Computing for Integrative Biomedical Research. - Tahsin M. Kurç; Shannon Hastings; Vijay S. Kumar; Stephen Langella; Ashish Sharma 001; Tony Pan; Scott Oster; David Ervin; Justin Permar; Sivaramakrishnan Narayanan; Yolanda Gil; Ewa Deelman; et al. (Int. J. High Perform. Comput. Appl., 2009)

VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid. - Ashish Sharma 001; Tony Pan; Berkant Barla Cambazoglu; Metin N. Gurcan; Tahsin M. Kurç; Joel H. Saltz (J. Digit. Imaging, 2009)

High-Performance Systems for in Silico Microscopy Imaging Studies. - Fusheng Wang 001; Tahsin M. Kurç; Patrick M. Widener; Tony Pan; Jun Kong 002; Lee Cooper 001; David A. Gutman; Ashish Sharma 001; Sharath R. Cholleti; Vijay Kumar (DILS, 2010)

High Performance Computing Techniques for Scaling Image Analysis Workflows. - Patrick M. Widener; Tahsin M. Kurç; Wenjin Chen; Fusheng Wang 001; Lin Yang 002; Jun Hu; Vijay Kumar; Vicky Chu; Lee Cooper 001; Jun Kong 002; Ashish Sharma 001; Tony Pan; et al. (PARA (2), 2010)

An Integrative Approach for In Silico Glioma Research. - Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Fusheng Wang 001; Sharath R. Cholleti; Tony C. Pan; Patrick M. Widener; Ashish Sharma 001; Tom Mikkelsen; Adam E. Flanders; Daniel L. Rubin; Erwin G. Van Meir; et al. (IEEE Trans. Biomed. Eng., 2010)

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. - David J. Foran; Lin Yang 002; Wenjin Chen; Jun Hu; Lauri A. Goodell; Michael Reiss; Fusheng Wang 001; Tahsin M. Kurç; Tony Pan; Ashish Sharma 001; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2011)

Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. - Jun Kong 002; Lee A. D. Cooper; Fusheng Wang 001; David A. Gutman; Jingjing Gao; Candace Chisolm; Ashish Sharma 001; Tony Pan; Erwin G. Van Meir; Tahsin M. Kurç; Carlos Sanchez Moreno; Joel H. Saltz; et al. (IEEE Trans. Biomed. Eng., 2011)

High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. - Tahsin M. Kurç; Joel H. Saltz; George Teodoro; Tony Pan; Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Daniel J. Brat; Fusheng Wang 001 (AMIA, 2012)

Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. - George Teodoro; Tahsin M. Kurç; Tony Pan; Lee A. D. Cooper; Jun Kong 002; Patrick M. Widener; Joel H. Saltz (IPDPS, 2012)

High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Joel H. Saltz (CoRR, 2012)

Integrated morphologic analysis for the identification and characterization of disease subtypes. - Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Fusheng Wang 001; Jingjing Gao; Christina Appin; Sharath R. Cholleti; Tony Pan; Ashish Sharma 001; Lisa Scarpace; Tom Mikkelsen; Tahsin M. Kurç; et al. (J. Am. Medical Informatics Assoc., 2012)

Whitepapers on Imaging Infrastructure for Research - Part 1: General Workflow Considerations. - Bradley James Erickson; Tony Pan; Daniel S. Marcus (J. Digit. Imaging, 2012)

Imaging Infrastructure for Research. Part 2. Data Management Practices. - Daniel S. Marcus; Bradley James Erickson; Tony Pan (J. Digit. Imaging, 2012)

Whitepapers on Imaging Infrastructure for Research Part Three: Security and Privacy. - Tony Pan; Bradley James Erickson; Daniel S. Marcus (J. Digit. Imaging, 2012)

Digital Pathology: Data-Intensive Frontier in Medical Imaging. - Lee A. D. Cooper; Alexis B. Carter; Alton B. Farris; Fusheng Wang 001; Jun Kong 002; David A. Gutman; Patrick M. Widener; Tony C. Pan; Sharath R. Cholleti; Ashish Sharma 001; Tahsin M. Kurç; Daniel J. Brat; et al. (Proc. IEEE, 2012)

High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. - Jun Kong 002; Fusheng Wang 001; George Teodoro; Lee Cooper 001; Carlos Sanchez Moreno; Tahsin M. Kurç; Tony Pan; Joel H. Saltz; Daniel J. Brat (BIBM, 2013)

High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Norbert Podhorszki; Scott Klasky; Joel H. Saltz (IPDPS, 2013)

Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures. - Joel H. Saltz; George Teodoro; Tony Pan; Lee A. D. Cooper; Jun Kong 002; Scott Klasky; Tahsin M. Kurç (Int. J. High Perform. Comput. Appl., 2013)

Semantically Interoperable XML Data. - Cristobal Vergara-Niedermayr; Fusheng Wang 001; Tony Pan; Tahsin M. Kurç; Joel H. Saltz (Int. J. Semantic Comput., 2013)

Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Joel H. Saltz (Parallel Comput., 2013)

Region Templates: Data Representation and Management for Large-Scale Image Analysis. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Scott Klasky; Joel H. Saltz (CoRR, 2014)

Region templates: Data representation and management for high-throughput image analysis. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Scott Klasky; Joel H. Saltz (Parallel Comput., 2014)

A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications. - Patrick Flick; Chirag Jain; Tony Pan; Srinivas Aluru (SC, 2015)

Parallel Pairwise Correlation Computation on Intel Xeon Phi Clusters. - Yongchao Liu; Tony Pan; Srinivas Aluru (SBAC-PAD, 2016)

An Adaptive Parallel Algorithm for Computing Connectivity. - Chirag Jain; Patrick Flick; Tony Pan; Oded Green; Srinivas Aluru (CoRR, 2016)

Parallelized Kendall's Tau Coefficient Computation via SIMD Vectorized Sorting On Many-Integrated-Core Processors. - Yongchao Liu; Tony Pan; Oded Green; Srinivas Aluru (CoRR, 2017)

Reprint of "A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications". - Patrick Flick; Chirag Jain; Tony Pan; Srinivas Aluru (Parallel Comput., 2017)

An Adaptive Parallel Algorithm for Computing Connected Components. - Chirag Jain; Patrick Flick; Tony Pan; Oded Green; Srinivas Aluru (IEEE Trans. Parallel Distributed Syst., 2017)

Performance extraction and suitability analysis of multi- and many-core architectures for next generation sequencing secondary analysis. - Sanchit Misra; Tony C. Pan; Kanak Mahadik; George Powley; Priya N. Vaidya; Md. Vasimuddin; Srinivas Aluru (PACT, 2018)

Optimizing high performance distributed memory parallel hash tables for DNA k-mer counting. - Tony C. Pan; Sanchit Misra; Srinivas Aluru (SC, 2018)

Distributed memory building blocks for massive biological sequence analysis. - Tony C. Pan (2018)

Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems. - Tony Pan; Patrick Flick; Chirag Jain; Yongchao Liu; Srinivas Aluru (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Fast de Bruijn Graph Compaction in Distributed Memory Environments. - Tony Pan; Rahul Nihalani; Srinivas Aluru (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Eaglescope: an interactive visualization and cohort selection tool for biomedical data exploration. - Ryan Birmingham; Nan Li; Tony Pan; Yahia Zakariya (Zenodo, 2024)

Eaglescope. - Ryan Birmingham; Nan Li; Zakariya Yahiya; Tony Pan (Zenodo, 2024)

Eaglescope: an interactive visualization and cohort selection tool for biomedical data exploration. - Ryan Birmingham; Nan Li; Tony Pan; Yahia Zakaria (J. Open Source Softw., 2024)