RegScan: a GWAS tool for quick estimation of allele effects on continuous traits and their combinations. - Toomas Haller; Mart Kals; Tõnu Esko; Reedik Mägi; Krista Fischer (Briefings Bioinform., 2015)

Manhattan Harvester and Cropper: a system for GWAS peak detection. - Toomas Haller; Tõnis Tasa; Andres Metspalu (BMC Bioinform., 2019)