SALSA: improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments. - Torbjørn Rognes; Erling Seeberg (Bioinform., 1998)

Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors. - Torbjørn Rognes; Erling Seeberg (Bioinform., 2000)

PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology. - Per Eystein Sæbø; Sten Morten Andersen; Jon Myrseth; Jon K. Laerdahl; Torbjørn Rognes (Nucleic Acids Res., 2005)

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation. - Torbjørn Rognes (BMC Bioinform., 2011)

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. - Ksenia Khelik; Karin Lagesen; Geir Kjetil Sandve; Torbjørn Rognes; Alexander Johan Nederbragt (BMC Bioinform., 2017)

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads. - Ksenia Khelik; Geir Kjetil Sandve; Alexander Johan Nederbragt; Torbjørn Rognes (BMC Bioinform., 2020)

Swarm v3: towards tera-scale amplicon clustering. - Frédéric Mahé; Lucas Czech; Alexandros Stamatakis; Christopher Quince; Colomban de Vargas; Micah Dunthorn; Torbjørn Rognes (Bioinform., 2021)

CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching. - Torbjørn Rognes; Lonneke Scheffer; Victor Greiff; Geir Kjetil Sandve (Bioinform., 2022)

HoCoRT: host contamination removal tool. - Ignas Rumbavicius; Trine Rounge; Torbjørn Rognes (BMC Bioinform., 2023)