Bioinformatics in Medical Practice: What is Necessary for a Hospital? - Thomas Bürkle; Torsten Hain; Hamid Hossain; Joachim Dudeck; Eugen Domann (MedInfo, 2001)

GenomeViz: visualizing microbial genomes. - Rohit Ghai; Torsten Hain; Trinad Chakraborty (BMC Bioinform., 2004)

Augur - a computational pipeline for whole genome microbial surface protein prediction and classification. - André Billion; Rohit Ghai; Trinad Chakraborty; Torsten Hain (Bioinform., 2006)

GECO-linear visualization for comparative genomics. - C. T. Kuenne; Rohit Ghai; Trinad Chakraborty; Torsten Hain (Bioinform., 2007)

ReferenceSeeker: rapid determination of appropriate reference genomes. - Oliver Schwengers; Torsten Hain; Trinad Chakraborty; Alexander Goesmann (J. Open Source Softw., 2020)

ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. - Oliver Schwengers; Andreas Hoek; Moritz Fritzenwanker; Linda Falgenhauer; Torsten Hain; Trinad Chakraborty; Alexander Goesmann (PLoS Comput. Biol., 2020)