Simple high-throughput annotation pipeline (SHAP). - Matthew Z. DeMaere; Federico M. Lauro; Torsten Thomas; Sheree Yau; Ricardo Cavicchioli (Bioinform., 2011)

Bacteriophage evolution drives Pseudomonas aeruginosa PAO1 biofilm diversification. - Kerensa McElroy; Fabio Luciani; Janice Hui; Scott Rice; Torsten Thomas (BMC Bioinform., 2011)

Binning_refiner: improving genome bins through the combination of different binning programs. - Wei-Zhi Song; Torsten Thomas (Bioinform., 2017)

MarkerMAG: linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads. - Wei-Zhi Song; Shan Zhang; Torsten Thomas (Bioinform., 2022)