Periortree: An Extention of R-Tree for Periodic Boundary Conditions. - Toru Niina (CoRR, 2017)

Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations. - Toru Niina; Giovanni B. Brandani; Cheng Tan 004; Shoji Takada (PLoS Comput. Biol., 2017)

Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure. - Toru Niina; Yasuhiro Matsunaga; Shoji Takada (PLoS Comput. Biol., 2021)