Calculating standard reduction potentials of [4Fe-4S] proteins. - Bradley Scott Perrin Jr.; Shuqiang Niu; Toshiko Ichiye (J. Comput. Chem., 2013)

Web-Based Computational Chemistry Education with CHARMMing I: Lessons and Tutorial. - Benjamin T. Miller; Rishi P. Singh; Vinushka Schalk; Yuri Pevzner; Jingjun Sun; Carrie S. Miller; Stefan Boresch; Toshiko Ichiye; Bernard R. Brooks; H. Lee Woodcock III (PLoS Comput. Biol., 2014)

Web-Based Computational Chemistry Education with CHARMMing III: Reduction Potentials of Electron Transfer Proteins. - Bradley Scott Perrin Jr.; Benjamin T. Miller; Vinushka Schalk; H. Lee Woodcock III; Bernard R. Brooks; Toshiko Ichiye (PLoS Comput. Biol., 2014)

Extreme biophysics: Enzymes under pressure. - Qi Huang; Jocelyn M. Rodgers; Russell J. Hemley; Toshiko Ichiye (J. Comput. Chem., 2017)

Reduction potential calculations of the Fe-S clusters in Thermus thermophilus respiratory complex I. - Kelly N. Tran; Shuqiang Niu; Toshiko Ichiye (J. Comput. Chem., 2019)