CoCAS: a ChIP-on-chip analysis suite. - Touati Benoukraf; Pierre Cauchy; Romain Fenouil; Adrien Jeanniard; Frederic Koch; Sébastien Jaeger; Denis Thieffry; Jean Imbert; Jean-Christophe Andrau; Salvatore Spicuglia; Pierre Ferrier (Bioinform., 2009)

Methodological aspects of whole-genome bisulfite sequencing analysis. - Swarnaseetha Adusumalli; Mohd Feroz Mohd Omar; Richie Soong; Touati Benoukraf (Briefings Bioinform., 2015)

Pasha: a versatile R package for piling chromatin HTS data. - Romain Fenouil; Nicolas Descostes; Lionel Spinelli; Frederic Koch; Muhammad Ahmad Maqbool; Touati Benoukraf; Pierre Cauchy; Charlène Innocenti; Pierre Ferrier; Jean-Christophe Andrau (Bioinform., 2016)

miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set. - Luqman Hakim Abdul Hadi; Quy Xiao Xuan Lin; Tri Tran Minh; Marie Loh; Hong Kiat Ng; Agus Salim; Richie Soong; Touati Benoukraf (BMC Bioinform., 2018)

MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles. - Quy Xiao Xuan Lin; Stephanie Sian; Omer An; Denis Thieffry; Sudhakar Jha; Touati Benoukraf (Nucleic Acids Res., 2019)

Correspondence on NanoVar's performance outlined by Jiang T. et al. in "Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation". - Cheng Yong Tham; Touati Benoukraf (BMC Bioinform., 2023)