Directed acyclic graph kernels for structural RNA analysis. - Kengo Sato; Toutai Mituyama; Kiyoshi Asai; Yasubumi Sakakibara (BMC Bioinform., 2008)

Software.ncrna.org: web servers for analyses of RNA sequences. - Kiyoshi Asai; Hisanori Kiryu; Michiaki Hamada; Yasuo Tabei; Kengo Sato; Hiroshi Matsui; Yasubumi Sakakibara; Goro Terai; Toutai Mituyama (Nucleic Acids Res., 2008)

Prediction of RNA secondary structure using generalized centroid estimators. - Michiaki Hamada; Hisanori Kiryu; Kengo Sato; Toutai Mituyama; Kiyoshi Asai (Bioinform., 2009)

Predictions of RNA secondary structure by combining homologous sequence information. - Michiaki Hamada; Kengo Sato; Hisanori Kiryu; Toutai Mituyama; Kiyoshi Asai (Bioinform., 2009)

CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score. - Michiaki Hamada; Kengo Sato; Hisanori Kiryu; Toutai Mituyama; Kiyoshi Asai (Bioinform., 2009)

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs. - Toutai Mituyama; Kouichirou Yamada; Emi Hattori; Hiroaki Okida; Yukiteru Ono; Goro Terai; Aya Yoshizawa; Takashi Komori; Kiyoshi Asai (Nucleic Acids Res., 2009)

CENTROIDFOLD: a web server for RNA secondary structure prediction. - Kengo Sato; Michiaki Hamada; Kiyoshi Asai; Toutai Mituyama (Nucleic Acids Res., 2009)

A Non-Parametric Bayesian Approach for Predicting RNA Secondary Structures. - Kengo Sato; Michiaki Hamada; Toutai Mituyama; Kiyoshi Asai; Yasubumi Sakakibara (J. Bioinform. Comput. Biol., 2010)

Non-redundant compendium of human ncRNA genes in GeneCards. - Frida Belinky; Iris Bahir; Gil Stelzer; Shahar Zimmerman; Naomi Rosen; Noam Nativ; Irina Dalah; Tsippi Iny Stein; Noa Rappaport; Toutai Mituyama; Marilyn Safran; Doron Lancet (Bioinform., 2013)

DBTSS/DBKERO for integrated analysis of transcriptional regulation. - Ayako Suzuki; Shin Kawano; Toutai Mituyama; Mikita Suyama; Yae Kanai; Katsuhiko Shirahige; Hiroyuki Sasaki; Katsushi Tokunaga; Katsuya Tsuchihara; Sumio Sugano; Kenta Nakai; Yutaka Suzuki (Nucleic Acids Res., 2018)