The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. - Andreas Wilke; Travis Harrison; Jared Wilkening; Dawn Field; Elizabeth M. Glass; Nikos Kyrpides; Konstantinos Mavrommatis; Folker Meyer (BMC Bioinform., 2012)

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE. - Kevin P. Keegan; William L. Trimble; Jared Wilkening; Andreas Wilke; Travis Harrison; Mark D'Souza; Folker Meyer (PLoS Comput. Biol., 2012)

Workload characterization for MG-RAST metagenomic data analytics service in the cloud. - Wei Tang 001; Jared Bischof; Narayan Desai; Kanak Mahadik; Wolfgang Gerlach; Travis Harrison; Andreas Wilke; Folker Meyer (IEEE BigData, 2014)

Skyport: container-based execution environment management for multi-cloud scientific workflows. - Wolfgang Gerlach; Wei Tang 001; Kevin P. Keegan; Travis Harrison; Andreas Wilke; Jared Bischof; Mark D'Souza; Scott Devoid; Daniel E. Murphy-Olson; Narayan Desai; Folker Meyer (DataCloud@SC, 2014)

Shock: Active Storage for Multicloud Streaming Data Analysis. - Andreas Wilke; Wolfgang Gerlach; Travis Harrison; Tobias Paczian; Wei Tang 001; William L. Trimble; Jared Wilkening; Narayan Desai; Folker Meyer (BDC, 2015)

A RESTful API for Accessing Microbial Community Data for MG-RAST. - Andreas Wilke; Jared Bischof; Travis Harrison; Tom Brettin; Mark D'Souza; Wolfgang Gerlach; Hunter Matthews; Tobias Paczian; Jared Wilkening; Elizabeth M. Glass; Narayan Desai; Folker Meyer (PLoS Comput. Biol., 2015)

The MG-RAST metagenomics database and portal in 2015. - Andreas Wilke; Jared Bischof; Wolfgang Gerlach; Elizabeth M. Glass; Travis Harrison; Kevin P. Keegan; Tobias Paczian; William L. Trimble; Saurabh Bagchi; Ananth Grama; Somali Chaterji; Folker Meyer (Nucleic Acids Res., 2016)

Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads. - Ashraf Mahgoub; Paul Wood; Sachandhan Ganesh; Subrata Mitra; Wolfgang Gerlach; Travis Harrison; Folker Meyer; Ananth Grama; Saurabh Bagchi; Somali Chaterji (Middleware, 2017)

On the way to research objects for environmental genomics (or metagenomics). - Folker Meyer; Robert D. Finn; Wolfgang Gerlach; Alex L. Mitchell; Travis Harrison; Andreas Wilke (RO, 2018)

MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. - Folker Meyer; Saurabh Bagchi; Somali Chaterji; Wolfgang Gerlach; Ananth Grama; Travis Harrison; Tobias Paczian; William L. Trimble; Andreas Wilke (Briefings Bioinform., 2019)

The MG-RAST API explorer: an on-ramp for RESTful query composition. - Tobias Paczian; William L. Trimble; Wolfgang Gerlach; Travis Harrison; Andreas Wilke; Folker Meyer (BMC Bioinform., 2019)