Cognitive Evaluation of an Innovative Psychiatric Clinical Knowledge Enhancement System. - Trevor Cohen; David Kaufman; Thomas White; Gerald Segal; Amy Bennett Staub; Vimla L. Patel; Molly T. Finnerty (MedInfo, 2004)

Exploring dangerous neighborhoods: Latent Semantic Analysis and computing beyond the bounds of the familiar. - Trevor Cohen; Brett Blatter; Vimla L. Patel (AMIA, 2005)

A cognitive blueprint of collaboration in context: Distributed cognition in the psychiatric emergency department. - Trevor Cohen; Brett Blatter; Carlos Almeida; Edward H. Shortliffe; Vimla L. Patel (Artif. Intell. Medicine, 2006)

Customizing clinical narratives for the electronic medical record interface using cognitive methods. - Pallav Sharda; Amar K. Das; Trevor Cohen; Vimla L. Patel (Int. J. Medical Informatics, 2006)

Research Paper: Reevaluating Recovery: Perceived Violations and Preemptive Interventions on Emergency Psychiatry Rounds. - Trevor Cohen; Brett Blatter; Carlos Almeida; Vimla L. Patel (J. Am. Medical Informatics Assoc., 2007)

Exploring MEDLINE Space with Random Indexing and Pathfinder Networks. - Trevor Cohen (AMIA, 2008)

Simulating expert clinical comprehension: Adapting latent semantic analysis to accurately extract clinical concepts from psychiatric narrative. - Trevor Cohen; Brett Blatter; Vimla L. Patel (J. Biomed. Informatics, 2008)

Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space. - Trevor Cohen; Roger W. Schvaneveldt; Thomas C. Rindflesch (AMIA, 2009)

The Cognitive Basis of Effective Team Performance: Features of Failure and Success in Simulated Cardiac Resuscitation. - Pallavi Shetty; Trevor Cohen; Bhavesh Patel; Vimla L. Patel (AMIA, 2009)

Visualization and Analysis of Activities in Critical Care Environments. - Mithra Vankipuram; Kanav Kahol; Trevor Cohen; Vimla L. Patel (AMIA, 2009)

Semantic Vector Combinations and the Synoptic Gospels. - Dominic Widdows; Trevor Cohen (QI, 2009)

Empirical distributional semantics: Methods and biomedical applications. - Trevor Cohen; Dominic Widdows (J. Biomed. Informatics, 2009)

Logical Leaps and Quantum Connectives: Forging Paths through Predication Space. - Trevor Cohen; Dominic Widdows; Roger W. Schvaneveldt; Thomas C. Rindflesch (AAAI Fall Symposium: Quantum Informatics for Cognitive, Social, and Semantic Processes, 2010)

A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. - Siddhartha Jonnalagadda; Robert Leaman; Trevor Cohen; Graciela Gonzalez 001 (CICLing, 2010)

The Trajectory of Scientific Discovery: Concept Co-Occurrence and Converging Semantic Distance. - Trevor Cohen; Roger W. Schvaneveldt (MedInfo, 2010)

The Semantic Vectors Package: New Algorithms and Public Tools for Distributional Semantics. - Dominic Widdows; Trevor Cohen (ICSC, 2010)

Reflective Random Indexing and indirect inference: A scalable method for discovery of implicit connections. - Trevor Cohen; Roger W. Schvaneveldt; Dominic Widdows (J. Biomed. Informatics, 2010)

Reflective random indexing for semi-automatic indexing of the biomedical literature. - Vidya Vasuki; Trevor Cohen (J. Biomed. Informatics, 2010)

Finding Schizophrenia's Prozac Emergent Relational Similarity in Predication Space. - Trevor Cohen; Dominic Widdows; Roger W. Schvaneveldt; Thomas C. Rindflesch (QI, 2011)

MEDRank: Using graph-based concept ranking to index biomedical texts. - Jorge R. Herskovic; Trevor Cohen; Devika Subramanian; M. Sriram Iyengar; Jack W. Smith; Elmer V. Bernstam (Int. J. Medical Informatics, 2011)

Making sense: Sensor-based investigation of clinician activities in complex critical care environments. - Thomas George Kannampallil; Zhe Li 053; Min Zhang 001; Trevor Cohen; David J. Robinson; Amy Franklin; Jiajie Zhang; Vimla L. Patel (J. Biomed. Informatics, 2011)

Considering complexity in healthcare systems. - Thomas George Kannampallil; Guido F. Schauer; Trevor Cohen; Vimla L. Patel (J. Biomed. Informatics, 2011)

Recovery at the edge of error: Debunking the myth of the infallible expert. - Vimla L. Patel; Trevor Cohen; Tripti Murarka; Joanne Olsen; Srujana Kagita; Sahiti Myneni; Timothy G. Buchman; Vafa Ghaemmaghami (J. Biomed. Informatics, 2011)

Toward automated workflow analysis and visualization in clinical environments. - Mithra Vankipuram; Kanav Kahol; Trevor Cohen; Vimla L. Patel (J. Biomed. Informatics, 2011)

Hyperdimensional Computing Approach to Word Sense Disambiguation. - Bjoern-Toby Berster; Joshua Goodwin; Trevor Cohen (AMIA, 2012)

Designing a Learning Technology for Community Health Workers. - Claire Loe; Trevor Cohen; Jiajie Zhang; Maria Fernandez; Amy Franklin (AMIA, 2012)

Reducing Cognitive Load: Exploring Knowledge Model-driven Clinical Information Displays. - Dean F. Sittig; Allison B. McCoy; Adam Wright; Amy Franklin; Trevor Cohen (AMIA, 2012)

Deterministic Binary Vectors for Efficient Automated Indexing of MEDLINE/PubMed Abstracts. - Manuel Wahle; Dominic Widdows; Jorge R. Herskovic; Elmer V. Bernstam; Trevor Cohen (AMIA, 2012)

Discovery at a distance: Farther journeys in predication space. - Trevor Cohen; Dominic Widdows; Roger W. Schvaneveldt; Thomas C. Rindflesch (BIBM Workshops, 2012)

Discovery by scent: Discovery browsing system based on the Information Foraging Theory. - J. Caleb Goodwin; Trevor Cohen; Thomas C. Rindflesch (BIBM Workshops, 2012)

Many Paths Lead to Discovery: Analogical Retrieval of Cancer Therapies. - Trevor Cohen; Dominic Widdows; Lance De Vine; Roger W. Schvaneveldt; Thomas C. Rindflesch (QI, 2012)

Real, Complex, and Binary Semantic Vectors. - Dominic Widdows; Trevor Cohen (QI, 2012)

Graph-based signal integration for high-throughput phenotyping. - Jorge R. Herskovic; Devika Subramanian; Trevor Cohen; Pamela A. Bozzo-Silva; Charles F. Bearden; Elmer V. Bernstam (BMC Bioinform., 2012)

Focus on information retrieval: Predicting biomedical document access as a function of past use. - J. Caleb Goodwin; Todd R. Johnson; Trevor Cohen; Jorge R. Herskovic; Elmer V. Bernstam (J. Am. Medical Informatics Assoc., 2012)

Discovering discovery patterns with predication-based Semantic Indexing. - Trevor Cohen; Dominic Widdows; Roger W. Schvaneveldt; Peter Davies 002; Thomas C. Rindflesch (J. Biomed. Informatics, 2012)

Enhancing clinical concept extraction with distributional semantics. - Siddhartha Jonnalagadda; Trevor Cohen; Stephen T. Wu; Graciela Gonzalez 001 (J. Biomed. Informatics, 2012)

Avatar-based simulation in the evaluation of diagnosis and management of mental health disorders in primary care. - Rachel M. Satter; Trevor Cohen; Pierina Ortiz; Kanav Kahol; James Mackenzie; Carol Olson; Mina Johnson; Vimla L. Patel (J. Biomed. Informatics, 2012)

Characterizing the Effects of a Cognitive Support System for Psychiatric Clinical Comprehension Venkata V.K. Dalai, MBBS, MPH, Dinesh Gottipatti, MS. Thomas Kannampallil, MS. Vineeth John, MD, MBA. Trevor Cohen, MBChB, PhD. University of Texas School of Biomedical Informatics1. New York Academy of Medicine2. University of Texas Medical School at Houston3. - Venkata Vijaya Kumar Dalai; Dinesh Gottipati; Thomas George Kannampallil; Trevor Cohen (AMIA, 2013)

Reflective Random Indexing to Develop a Medication-Problem Knowledge Base. - Safa Fathiamini; Trevor Cohen; Allison B. McCoy; Dean F. Sittig (AMIA, 2013)

Word Sense Disambiguation of Clinical Abbreviations with Hyperdimensional Computing. - Sungrim Moon; Bjoern-Toby Berster; Hua Xu 001; Trevor Cohen (AMIA, 2013)

Individual Attributes of Behavior Change in an Online Social Network. - Sahiti Myneni; Amy Franklin; Nathan K. Cobb; Trevor Cohen (AMIA, 2013)

Evaluation of Vector Space Models for Medical Disorders Information Retrieval. - Yaoyun Zhang; Trevor Cohen; Min Jiang 007; Buzhou Tang; Hua Xu 001 (CLEF (Working Notes), 2013)

Finding Meaning in Social Media: Content-based Social Network Analysis of QuitNet to Identify New Opportunities for Health Promotion. - Sahiti Myneni; Nathan K. Cobb; Trevor Cohen (MedInfo, 2013)

Identifying Persuasive Qualities of Decentralized Peer-to-Peer Online Social Networks in Public Health. - Sahiti Myneni; M. Sriram Iyengar; Nathan K. Cobb; Trevor Cohen (PERSUASIVE, 2013)

Orthogonality and Orthography: Introducing Measured Distance into Semantic Space. - Trevor Cohen; Dominic Widdows; Manuel Wahle; Roger W. Schvaneveldt (QI, 2013)

Understanding the nature of information seeking behavior in critical care: Implications for the design of health information technology. - Thomas George Kannampallil; Amy Franklin; Rashmi Mishra; Khalid F. Almoosa; Trevor Cohen; Vimla L. Patel (Artif. Intell. Medicine, 2013)

Exploring the Use of SemRep Predications to Help Identify Secondary Drug Targets for Personalized Cancer Therapy. - Safa Fathiamini; Amber M. Johnson; Vijaykumar Holla; Ann M. Bailey; Jia Zeng; Lauren Brusco; Funda Meric-Bernstam; Elmer V. Bernstam; Trevor Cohen (AMIA, 2014)

A study of synonym extraction from clinical texts using semantic vector models. - Sungrim Moon; Trevor Cohen; Hua Xu 001 (AMIA, 2014)

Facilitating Visual Exploration of System-generated Reasoning Pathways underlying Drug-Side effect Relations. - Sahiti Myneni; Trevor Cohen (AMIA, 2014)

Using Ontology Fingerprints to Disambiguate Gene Name Entities in the Biomedical Literature. - Guocai Chen; Jieyi Zhao; Trevor Cohen; Cui Tao; Jingchun Sun; Hua Xu 001; Elmer V. Bernstam; Jia Zeng; Amber M. Johnson; Vijaykumar Holla; Ann Balley; Funda Meric-Bernstam; et al. (ICBO, 2014)

Expansion-by-Analogy: A Vector Symbolic Approach to Semantic Search. - Trevor Cohen; Dominic Widdows; Thomas C. Rindflesch (QI, 2014)

Evaluating the effects of cognitive support on psychiatric clinical comprehension. - Venkata Vijaya Kumar Dalai; Sana Khalid; Dinesh Gottipati; Thomas George Kannampallil; Vineeth John; Brett Blatter; Vimla L. Patel; Trevor Cohen (Artif. Intell. Medicine, 2014)

Identifying plausible adverse drug reactions using knowledge extracted from the literature. - Ning Shang; Hua Xu 001; Thomas C. Rindflesch; Trevor Cohen (J. Biomed. Informatics, 2014)

Real Time Active Learning Study for Clinical Named Entity Recognition. - Yukun Chen 001; Sungrim Moon; Thomas A. Lasko; Qiaozhu Mei; Jingqi Wang; Trevor Cohen; Qingxia Chen; Joshua C. Denny; Hua Xu 001 (AMIA, 2015)

Evaluating the Effects of Cognitive Support on Interpreting ICU Patient Data. - Peter V. Killoran; Swaroop Gantela; Sahiti Myneni; Khalid F. Almoosa; Bela Patel; Thomas George Kannampallil; Vimla L. Patel; Trevor Cohen (AMIA, 2015)

Improving Retrieval of PubMed Articles Using the TopicalMeSH Representation. - Zhiguo Yu; Elmer V. Bernstam; Trevor Cohen; Byron C. Wallace; Todd R. Johnson (AMIA, 2015)

Embedding Probabilities in Predication Space with Hermitian Holographic Reduced Representations. - Trevor Cohen; Dominic Widdows (QI, 2015)

Graded Semantic Vectors: An Approach to Representing Graded Quantities in Generalized Quantum Models. - Dominic Widdows; Trevor Cohen (QI, 2015)

Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature. - Guocai Chen; Jieyi Zhao; Trevor Cohen; Cui Tao; Jingchun Sun; Hua Xu 001; Elmer V. Bernstam; Andrew Lawson; Jia Zeng; Amber M. Johnson; Vijaykumar Holla; Ann M. Bailey; et al. (Database J. Biol. Databases Curation, 2015)

Reasoning with vectors: A continuous model for fast robust inference. - Dominic Widdows; Trevor Cohen (Log. J. IGPL, 2015)

Retrofitting Word Vectors of MeSH Terms to Improve Semantic Similarity Measures. - Zhiguo Yu; Trevor Cohen; Byron C. Wallace; Elmer V. Bernstam; Todd R. Johnson (Louhi@EMNLP, 2016)

A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. - Jeffrey S. Grethe; Ibrahim Burak Özyurt; Hua Xu 001; Xiaoling Chen; Ruiling Liu; Ergin Soysal; Anupama E. Gururaj; Hyeon-Eui Kim; Trevor Cohen; Todd R. Johnson; Mandana Salimi; Saeid Pournejati; et al. (AMIA, 2016)

Literature-Based Discovery of Confounding in Observational Clinical Data. - Scott A. Malec; Peng Wei; Hua Xu 001; Elmer V. Bernstam; Sahiti Myneni; Trevor Cohen (AMIA, 2016)

Semantic Relatedness and Similarity between Biomedical Concepts. - Sungrim Moon; Trevor Cohen; Hua Xu 001 (AMIA, 2016)

Classification-by-Analogy: Using Vector Representations of Implicit Relationships to Identify Plausibly Causal Drug/Side-effect Relationships. - Justin Mower; Devika Subramanian; Ning Shang; Trevor Cohen (AMIA, 2016)

Content-specific network analysis of peer-to-peer communication in an online community for smoking cessation. - Sahiti Myneni; Nathan K. Cobb; Trevor Cohen (AMIA, 2016)

Characterization of Temporal Semantic Shifts of Peer-to-peer Communication in a Health-related Online Community: Implications for Data-driven Health Promotion. - Vishnupriya Sridharan; Trevor Cohen; Nathan K. Cobb; Sahiti Myneni (AMIA, 2016)

Analyzing Similarities in Handoff Communication Content between Residents and Nurses. - Vignesh Srinivasan; Thomas George Kannampallil; Trevor Cohen; Joanna Abraham (AMIA, 2016)

A Study of Active Learning for Document Selection in Clinical Named Entity Recognition. - Qiang Wei 002; Yukun Chen 001; Sungrim Moon; Trevor Cohen; Hua Xu 001 (AMIA, 2016)

Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. - Hua Xu 001; Jeffrey S. Grethe; Xiaoling Chen; Ruiling Liu; Ergin Soysal; Anupama E. Gururaj; Yueling Li; Ibrahim Burak Özyurt; Hyeon-Eui Kim; Trevor Cohen; Todd R. Johnson; Mandana Salimi; et al. (AMIA, 2016)

Graded Vector Representations of Immunoglobulins Produced in Response to West Nile Virus. - Trevor Cohen; Dominic Widdows; Jason A. Vander Heiden; Namita T. Gupta; Steven H. Kleinstein (QI, 2016)

Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov. - Jun Xu 007; Hee-Jin Lee; Jia Zeng; Yonghui Wu; Yaoyun Zhang; Liang-Chin Huang; Amber M. Johnson; Vijaykumar Holla; Ann M. Bailey; Trevor Cohen; Funda Meric-Bernstam; Elmer V. Bernstam; et al. (J. Am. Medical Informatics Assoc., 2016)

Automated identification of molecular effects of drugs (AIMED). - Safa Fathiamini; Amber M. Johnson; Jia Zeng; Alejandro Araya; Vijaykumar Holla; Ann M. Bailey; Beate Litzenburger; Nora S. Sanchez; Yekaterina Khotskaya; Hua Xu 001; Funda Meric-Bernstam; Elmer V. Bernstam; et al. (J. Am. Medical Informatics Assoc., 2016)

Improving the utility of MeSH® terms using the TopicalMeSH representation. - Zhiguo Yu; Elmer V. Bernstam; Trevor Cohen; Byron C. Wallace; Todd R. Johnson (J. Biomed. Informatics, 2016)

Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. - Kirk Roberts; Anupama E. Gururaj; Xiaoling Chen; Saeid Pournejati; Trevor Cohen; William R. Hersh; Dina Demner-Fushman; Lucila Ohno-Machado; Hua Xu 001 (AMIA, 2017)

Retrofitting Concept Vector Representations of Medical Concepts to Improve Estimates of Semantic Similarity and Relatedness. - Zhiguo Yu; Byron C. Wallace; Todd R. Johnson; Trevor Cohen (MedInfo, 2017)

Temporal Trends of Psychosociobehavioral Factors Underlying Tobacco Use: A Semi-Automated Exploratory Analysis of Peer-to-Peer Communication in a Health-Related Online Community. - Vishnupriya Sridharan; Trevor Cohen; Nathan K. Cobb; Sahiti Myneni (pHealth, 2017)

A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. - Trevor Cohen; Kirk Roberts; Anupama E. Gururaj; Xiaoling Chen; Saeid Pournejati; George Alter; William R. Hersh; Dina Demner-Fushman; Lucila Ohno-Machado; Hua Xu 001 (Database J. Biol. Databases Curation, 2017)

Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. - Kirk Roberts; Anupama E. Gururaj; Xiaoling Chen; Saeid Pournejati; William R. Hersh; Dina Demner-Fushman; Lucila Ohno-Machado; Trevor Cohen; Hua Xu 001 (Database J. Biol. Databases Curation, 2017)

Measuring content overlap during handoff communication using distributional semantics: An exploratory study. - Joanna Abraham; Thomas George Kannampallil; Vignesh Srinivasan; William L. Galanter; Gail Tagney; Trevor Cohen (J. Biomed. Informatics, 2017)

Using Pathfinder networks to discover alignment between expert and consumer conceptual knowledge from online vaccine content. - Muhammad Amith; Rachel Cunningham; Lara S. Savas; Julie Boom; Roger W. Schvaneveldt; Cui Tao; Trevor Cohen (J. Biomed. Informatics, 2017)

Embedding of semantic predications. - Trevor Cohen; Dominic Widdows (J. Biomed. Informatics, 2017)

An active learning-enabled annotation system for clinical named entity recognition. - Yukun Chen 001; Thomas A. Lasko; Qiaozhu Mei; Qingxia Chen; Sungrim Moon; Jingqi Wang; Ky Nguyen; Tolulola Dawodu; Trevor Cohen; Joshua C. Denny; Hua Xu 001 (BMC Medical Informatics Decis. Mak., 2017)

Clinical text annotation - what factors are associated with the cost of time? - Qiang Wei 002; Amy Franklin; Trevor Cohen; Hua Xu 001 (AMIA, 2018)

Bringing Order to Neural Word Embeddings with Embeddings Augmented by Random Permutations (EARP). - Trevor Cohen; Dominic Widdows (CoNLL, 2018)

The Portrayal of Quit Emotions: Content-Sensitive Analysis of Peer Interactions in an Online Community for Smoking Cessation. - Vishnupriya Sridharan; Trevor Cohen; Nathan K. Cobb; Sahiti Myneni (SBP-BRiMS, 2018)

DataMed - an open source discovery index for finding biomedical datasets. - Xiaoling Chen; Anupama E. Gururaj; Ibrahim Burak Özyurt; Ruiling Liu; Ergin Soysal; Trevor Cohen; Firat Tiryaki; Yueling Li; Nansu Zong; Min Jiang 007; Deevakar Rogith; Mandana Salimi; et al. (J. Am. Medical Informatics Assoc., 2018)

Learning predictive models of drug side-effect relationships from distributed representations of literature-derived semantic predications. - Justin Mower; Devika Subramanian; Trevor Cohen (J. Am. Medical Informatics Assoc., 2018)

Predicting Adverse Drug-Drug Interactions with Neural Embedding of Semantic Predications. - Hannah A. Burkhardt; Devika Subramanian; Justin Mower; Trevor A. Cohen (AMIA, 2019)

Complementing Observational Signal with Distributed Representations for Drug Side-effect Prediction. - Justin Mower; Trevor A. Cohen; Devika Subramanian (AMIA, 2019)

aer2vec: Distributed Representations of Adverse Event Reporting System Data as a Means to Identify Drug/Side-Effect Associations. - Jake Portanova; Nathan Murray; Justin Mower; Devika Subramanian; Trevor A. Cohen (AMIA, 2019)

Cost-aware active learning for named entity recognition in clinical text. - Qiang Wei 002; Yukun Chen 001; Mandana Salimi; Joshua C. Denny; Qiaozhu Mei; Thomas A. Lasko; Qingxia Chen; Stephen Wu 004; Amy Franklin; Trevor Cohen; Hua Xu 001 (J. Am. Medical Informatics Assoc., 2019)

Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text. - Safa Fathiamini; Amber M. Johnson; Jia Zeng; Vijaykumar Holla; Nora S. Sanchez; Funda Meric-Bernstam; Elmer V. Bernstam; Trevor Cohen (J. Biomed. Informatics, 2019)

A Tale of Two Perplexities: Sensitivity of Neural Language Models to Lexical Retrieval Deficits in Dementia of the Alzheimer's Type. - Trevor Cohen; Serguei Pakhomov (ACL, 2020)

Retrofitting Vector Representations of Adverse Event Reporting Data to Structured Knowledge to Improve Pharmacovigilance Signal Detection. - Xiruo Ding; Trevor A. Cohen (AMIA, 2020)

The Centroid Cannot Hold: Comparing Sequential and Global Estimates of Coherence as Indicators of Formal Thought Disorder. - Weizhe Xu; Jake Portanova; Ayesha Chander; Dror Ben-Zeev; Trevor A. Cohen (AMIA, 2020)

Improving Biomedical Analogical Retrieval with Embedding of Structural Dependencies. - Amandalynne Paullada; Bethany Percha; Trevor Cohen (BioNLP, 2020)

SCOR: A secure international informatics infrastructure to investigate COVID-19. - Jean Louis Raisaro; Francesco Marino; Juan Ramón Troncoso-Pastoriza; Raphaelle Beau-Lejdstrom; Riccardo Bellazzi; Robert Murphy; Elmer V. Bernstam; Henry Wang; Mauro Bucalo; Yong Chen 016; Assaf Gottlieb; Arif Ozgun Harmanci; et al. (J. Am. Medical Informatics Assoc., 2020)

Automated Lay Language Summarization of Biomedical Scientific Reviews. - Yue Guo 007; Wei Qiu 006; Yizhong Wang; Trevor Cohen (AAAI, 2021)

Linguistic indicators of Behavioral Activation in text-based therapy sessions anticipate changes in depression symptomatology. - Hannah A. Burkhardt; George Alexopoulos; Michael D. Pullmann; Thomas D. Hull; Patricia A. Areán; Trevor A. Cohen (AMIA, 2021)

Transitions Between Electronic and Combustible Cigarettes: A Mixed Methods Analysis of Peer Interactions in an Online Community for Tobacco Cessation. - Tavleen Singh; Nathan K. Cobb; Trevor Cohen; Sahiti Myneni (MIE, 2021)

Should Semantic Vector Composition be Explicit? Can it be Linear. - Dominic Widdows; Kristen Howell; Trevor Cohen (CoRR, 2021)

Crossing the "Cookie Theft" Corpus Chasm: Applying What BERT Learns From Outside Data to the ADReSS Challenge Dementia Detection Task. - Yue Guo 007; Changye Li 001; Carol Roan; Serguei Pakhomov; Trevor Cohen (Frontiers Comput. Sci., 2021)

Quantum Mathematics in Artificial Intelligence. - Dominic Widdows; Kirsty Kitto; Trevor Cohen (J. Artif. Intell. Res., 2021)

Augmenting aer2vec: Enriching distributed representations of adverse event report data with orthographic and lexical information. - Xiruo Ding; Justin Mower; Devika Subramanian; Trevor Cohen (J. Biomed. Informatics, 2021)

Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance. - Scott A. Malec; Peng Wei; Elmer V. Bernstam; Richard D. Boyce; Trevor Cohen (J. Biomed. Informatics, 2021)

GPT-D: Inducing Dementia-related Linguistic Anomalies by Deliberate Degradation of Artificial Neural Language Models. - Changye Li 001; David S. Knopman; Weizhe Xu; Trevor Cohen; Serguei Pakhomov (ACL (1), 2022)

Identifying opportunities for informatics-supported suicide prevention: the case of Caring Contacts. - Hannah A. Burkhardt; Megan Laine; Amanda Kerbrat; Trevor Cohen; Kate Comtois; Andrea L. Hartzler (AMIA, 2022)

Predicting Drug Blood-Brain Barrier Penetration with Adverse Event Report Embeddings. - YiFan Wu; Justin Mower; Xiruo Ding; Oliver Li; Devika Subramanian; Trevor Cohen (AMIA, 2022)

Improving Classification of Infrequent Cognitive Distortions: Domain-Specific Model vs. Data Augmentation. - Xiruo Ding; Kevin Lybarger; Justin Tauscher; Trevor Cohen (NAACL-HLT (Student Research Workshop), 2022)

CELLS: A Parallel Corpus for Biomedical Lay Language Generation. - Yue Guo 007; Wei Qiu 006; Gondy Leroy; Sheng Wang; Trevor Cohen (CoRR, 2022)

The Far Side of Failure: Investigating the Impact of Speech Recognition Errors on Subsequent Dementia Classification. - Changye Li 001; Trevor Cohen; Serguei Pakhomov (CoRR, 2022)

Fully automated detection of formal thought disorder with Time-series Augmented Representations for Detection of Incoherent Speech (TARDIS). - Weizhe Xu; Weichen Wang 001; Jake Portanova; Ayesha Chander; Andrew Campbell 001; Serguei Pakhomov; Dror Ben-Zeev; Trevor Cohen (J. Biomed. Informatics, 2022)

TRESTLE: Toolkit for Reproducible Execution of Speech, Text and Language Experiments. - Changye Li 001; Trevor Cohen; Martin Michalowski; Serguei Pakhomov (CoRR, 2023)

APPLS: A Meta-evaluation Testbed for Plain Language Summarization. - Yue Guo 007; Tal August; Gondy Leroy; Trevor Cohen; Lucy Lu Wang (CoRR, 2023)

Backdoor Adjustment of Confounding by Provenance for Robust Text Classification of Multi-institutional Clinical Notes. - Xiruo Ding; Zhecheng Sheng; Meliha Yetisgen; Serguei Pakhomov; Trevor Cohen (CoRR, 2023)

Deep Representations of First-person Pronouns for Prediction of Depression Symptom Severity. - Xinyang Ren; Hannah A. Burkhardt; Patricia A. Areán; Thomas D. Hull; Trevor Cohen (CoRR, 2023)

Enhancing Robustness of Foundation Model Representations under Provenance-related Distribution Shifts. - Xiruo Ding; Zhecheng Sheng; Brian Hur; Feng Chen; Serguei V. S. Pakhomov; Trevor Cohen (CoRR, 2023)

From benchmark to bedside: transfer learning from social media to patient-provider text messages for suicide risk prediction. - Hannah A. Burkhardt; Xiruo Ding; Amanda Kerbrat; Katherine Anne Comtois; Trevor Cohen (J. Am. Medical Informatics Assoc., 2023)

Discerning conversational context in online health communities for personalized digital behavior change solutions using Pragmatics to Reveal Intent in Social Media (PRISM) framework. - Tavleen Singh; Kirk Roberts; Trevor Cohen; Nathan K. Cobb; Amy Franklin; Sahiti Myneni (J. Biomed. Informatics, 2023)

The Power of Speech in the Wild: Discriminative Power of Daily Voice Diaries in Understanding Auditory Verbal Hallucinations Using Deep Learning. - Weichen Wang 001; Weizhe Xu; Ayesha Chander; Subigya Nepal; Benjamin Buck; Serguei Pakhomov; Trevor Cohen; Dror Ben-Zeev; Andrew Campbell 001 (Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., 2023)

Investigating Generalizability of Speech-based Suicidal Ideation Detection Using Mobile Phones. - Arvind Pillai; Subigya Kumar Nepal; Weichen Wang 001; Matthew Nemesure; Michael V. Heinz; George D. Price; Damien Lekkas; Amanda C. Collins; Tess Griffin; Benjamin Buck; Sarah Masud Preum; Trevor Cohen; et al. (Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., 2023)

Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data. - Chethan Jujjavarapu; Pradeep Suri; Vikas Pejaver; Janna Friedly; Laura S. Gold; Eric Meier; Trevor Cohen; Sean D. Mooney; Patrick J. Heagerty; Jeffrey G. Jarvik (BMC Medical Informatics Decis. Mak., 2023)

Too Big to Fail: Larger Language Models are Disproportionately Resilient to Induction of Dementia-Related Linguistic Anomalies. - Changye Li 001; Zhecheng Sheng; Trevor Cohen; Serguei Pakhomov (ACL (Findings), 2024)

APPLS: Evaluating Evaluation Metrics for Plain Language Summarization. - Yue Guo 007; Tal August; Gondy Leroy; Trevor Cohen; Lucy Lu Wang (EMNLP, 2024)

Personalized Jargon Identification for Enhanced Interdisciplinary Communication. - Yue Guo 007; Joseph Chee Chang; Maria Antoniak; Erin Bransom; Trevor Cohen; Lucy Lu Wang; Tal August (NAACL-HLT, 2024)

Bridging the Skills Gap: Evaluating an AI-Assisted Provider Platform to Support Care Providers with Empathetic Delivery of Protocolized Therapy. - William R. Kearns; Jessica Bertram; Myra Divina; Lauren Kemp; Yinzhou Wang; Alex Marin; Trevor Cohen; Weichao Yuwen (CoRR, 2024)

Reexamining Racial Disparities in Automatic Speech Recognition Performance: The Role of Confounding by Provenance. - Changye Li 001; Trevor Cohen; Serguei Pakhomov (CoRR, 2024)

Toward Automated Detection of Biased Social Signals from the Content of Clinical Conversations. - Feng Chen; Manas Satish Bedmutha; Ray-Yuan Chung; Janice Sabin; Wanda Pratt; Brian R Wood; Nadir Weibel; Andrea L. Hartzler; Trevor Cohen (CoRR, 2024)

Toward Large Language Models as a Therapeutic Tool: Comparing Prompting Techniques to Improve GPT-Delivered Problem-Solving Therapy. - Daniil Filienko; Yinzhou Wang; Caroline El Jazmi; Serena Jinchen Xie; Trevor Cohen; Martine De Cock; Weichao Yuwen (CoRR, 2024)

Large language models in biomedicine and health: current research landscape and future directions. - Zhiyong Lu; Yifan Peng 002; Trevor Cohen; Marzyeh Ghassemi; Chunhua Weng; Shubo Tian (J. Am. Medical Informatics Assoc., 2024)

Large language models for biomedicine: foundations, opportunities, challenges, and best practices. - Satya S. Sahoo; Joseph M. Plasek; Hua Xu 001; Özlem Uzuner; Trevor Cohen; Meliha Yetisgen; Hongfang Liu; Stéphane M. Meystre; Yanshan Wang (J. Am. Medical Informatics Assoc., 2024)

Useful blunders: Can automated speech recognition errors improve downstream dementia classification? - Changye Li 001; Weizhe Xu; Trevor Cohen; Serguei Pakhomov (J. Biomed. Informatics, 2024)

Opportunities for incorporating intersectionality into biomedical informatics. - Oliver J. Bear Don't Walk IV; Amandalynne Paullada; Avery R. Everhart; Reggie Casanova-Perez; Trevor Cohen; Tiffany C. Veinot (J. Biomed. Informatics, 2024)

Retrieval augmentation of large language models for lay language generation. - Yue Guo 007; Wei Qiu 006; Gondy Leroy; Sheng Wang; Trevor Cohen (J. Biomed. Informatics, 2024)

Mitigating Confounding in Speech-Based Dementia Detection through Weight Masking. - Zhecheng Sheng; Xiruo Ding; Brian Hur; Changye Li 001; Trevor Cohen; Serguei V. S. Pakhomov (ACL (1), 2025)

Coherence and comprehensibility: Large language models predict lay understanding of health-related content. - Trevor Cohen; Weizhe Xu; Yue Guo 007; Serguei Pakhomov; Gondy Leroy (J. Biomed. Informatics, 2025)

Tailoring task arithmetic to address bias in models trained on multi-institutional datasets. - Xiruo Ding; Zhecheng Sheng; Brian Hur; Justin Tauscher; Dror Ben-Zeev; Meliha Yetisgen; Serguei Pakhomov; Trevor Cohen (J. Biomed. Informatics, 2025)

Perplexity and proximity: Large language model perplexity complements semantic distance metrics for the detection of incoherent speech. - Weizhe Xu; Serguei Pakhomov; Patrick Heagerty; Eric Horvitz; Ellen Bradley; Joshua Woolley; Andrew T. Campbell; Alex S. Cohen; Dror Ben-Zeev; Trevor Cohen (J. Biomed. Informatics, 2025)

Bigger But Not Better: Small Neural Language Models Outperform Large Language Models in Detection of Thought Disorder. - Changye Li 001; Weizhe Xu; Serguei Pakhomov; Ellen Bradley; Dror Ben-Zeev; Trevor Cohen (CoRR, 2025)

"Is There Anything Else?": Examining Administrator Influence on Linguistic Features from the Cookie Theft Picture Description Cognitive Test. - Changye Li 001; Zhecheng Sheng; Trevor Cohen; Serguei Pakhomov (CoRR, 2025)

Detecting PTSD in Clinical Interviews: A Comparative Analysis of NLP Methods and Large Language Models. - Feng Chen; Dror Ben-Zeev; Gillian Sparks; Arya Kadakia; Trevor Cohen (CoRR, 2025)

Can Language Models Understand Social Behavior in Clinical Conversations? - Manas Satish Bedmutha; Feng Chen; Andrea L. Hartzler; Trevor Cohen; Nadir Weibel (CoRR, 2025)

Are LLM-generated plain language summaries truly understandable? A large-scale crowdsourced evaluation. - Yue Guo 007; Jae Ho Sohn; Gondy Leroy; Trevor Cohen (CoRR, 2025)

Reading Between the Lines: Combining Pause Dynamics and Semantic Coherence for Automated Assessment of Thought Disorder. - Feng Chen; Weizhe Xu; Changye Li 001; Serguei Pakhomov; Alex Cohen; Simran Bhola; Sandy Yin; Sunny X. Tang; Michael Mackinley; Lena Palaniyappan; Dror Ben-Zeev; Trevor Cohen (CoRR, 2025)