Genomic analysis of a rare human tumor. - Steven J. M. Jones; Janessa Laskin; Yvonne Y. Li; Obi L. Griffith; Jianghong An; Mikhail Bilenky; Yaron S. N. Butterfield; Timothee Cezard; Eric Chuah; Richard Corbett; Anthony P. Fejes; Malachi Griffith; et al. (BMC Bioinform., 2010)

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets. - Soroush Samadian; Jeff P. Bruce; Trevor J. Pugh (PLoS Comput. Biol., 2018)

CReSCENT: CanceR Single Cell ExpressioN Toolkit. - Suluxan Mohanraj; Juan Javier Díaz-Mejía; Martin D. Pham; Hillary Elrick; Mia Husic; Shaikh Rashid; Ping Luo; Prabnur Bal; Kevin Lu; Samarth Patel; Alaina Mahalanabis; Alaine Naidas; et al. (Nucleic Acids Res., 2020)

Evaluation of single-cell RNAseq labelling algorithms using cancer datasets. - Erik Christensen; Ping Luo; Andrei L. Turinsky; Mia Husic; Alaina Mahalanabis; Alaine Naidas; Juan Javier Díaz-Mejía; Michael Brudno; Trevor J. Pugh; Arun K. Ramani; Parisa Shooshtari (Briefings Bioinform., 2023)