A framework for installable external tools in Skyline. - Daniel Broudy; Trevor Killeen; Meena Choi; Nicholas Shulman; Deepak R. Mani; Susan E. Abbatiello; Deepak Mani; Rushdy Ahmad; Alexandria K. Sahu; Birgit Schilling; Kaipo Tamura; Yuval Boss; et al. (Bioinform., 2014)

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments. - Meena Choi; Ching-Yun Chang; Timothy Clough; Daniel Broudy; Trevor Killeen; Brendan MacLean; Olga Vitek (Bioinform., 2014)

PyTorch: An Imperative Style, High-Performance Deep Learning Library. - Adam Paszke; Sam Gross; Francisco Massa; Adam Lerer; James Bradbury; Gregory Chanan; Trevor Killeen; Zeming Lin; Natalia Gimelshein; Luca Antiga; Alban Desmaison; Andreas Köpf; et al. (NeurIPS, 2019)