Multi-model Simulations of Chicken Limb Morphogenesis. - Rajiv Chaturvedi; Jesús A. Izaguirre; Chengbang Huang; Trevor M. Cickovski; P. Virtue; Gilberto L. Thomas; Gabor Forgacs; Mark S. Alber; H. George E. Hentschel; Stuart A. Newman; James A. Glazier (International Conference on Computational Science, 2003)

COMPUCELL, a multi-model framework for simulation of morphogenesis. - Jesús A. Izaguirre; Rajiv Chaturvedi; Chengbang Huang; Trevor M. Cickovski; J. Coffland; Gilberto L. Thomas; Gabor Forgacs; Mark S. Alber; H. George E. Hentschel; Stuart A. Newman; James A. Glazier (Bioinform., 2004)

ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics. - Thierry Matthey; Trevor M. Cickovski; Scott S. Hampton; Alice Ko; Qun Ma; Matthew Nyerges; Troy Raeder; Thomas Slabach; Jesús A. Izaguirre (ACM Trans. Math. Softw., 2004)

A Framework for Three-Dimensional Simulation of Morphogenesis. - Trevor M. Cickovski; Chengbang Huang; Rajiv Chaturvedi; Tilmann Glimm; H. George E. Hentschel; Mark S. Alber; James A. Glazier; Stuart A. Newman; Jesús A. Izaguirre (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

MDL, A Domain-Specific Language for Molecular Dynamics. - Trevor M. Cickovski; Chris Sweet; Jesús A. Izaguirre (Annual Simulation Symposium, 2007)

From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development. - Trevor M. Cickovski; Kedar Aras; Maciej Swat; Roeland Merks; Tilmann Glimm; H. George E. Hentschel; Mark S. Alber; James A. Glazier; Stuart A. Newman; Jesús A. Izaguirre (Comput. Sci. Eng., 2007)

MDLab: A molecular dynamics simulation prototyping environment. - Trevor M. Cickovski; Santanu Chatterjee; Jacob Wenger; Christopher R. Sweet; Jesús A. Izaguirre (J. Comput. Chem., 2010)