GenomeViz: visualizing microbial genomes. - Rohit Ghai; Torsten Hain; Trinad Chakraborty (BMC Bioinform., 2004)

An Integrated Data-Warehouse-Concept for Clinical and Biological Information. - Dominik Brammen; Christian Katzer; Rainer Röhrig; Katja Weismüller; Michael Maier; Hamid Hossain; Thilo Menges; Gunter Hempelmann; Trinad Chakraborty (MIE, 2005)

Augur - a computational pipeline for whole genome microbial surface protein prediction and classification. - André Billion; Rohit Ghai; Trinad Chakraborty; Torsten Hain (Bioinform., 2006)

Integrated functional visualization of eukaryotic genomes. - Rohit Ghai; Hannes Lindemann; Trinad Chakraborty (BMC Bioinform., 2006)

GECO-linear visualization for comparative genomics. - C. T. Kuenne; Rohit Ghai; Trinad Chakraborty; Torsten Hain (Bioinform., 2007)

ReferenceSeeker: rapid determination of appropriate reference genomes. - Oliver Schwengers; Torsten Hain; Trinad Chakraborty; Alexander Goesmann (J. Open Source Softw., 2020)

ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. - Oliver Schwengers; Andreas Hoek; Moritz Fritzenwanker; Linda Falgenhauer; Torsten Hain; Trinad Chakraborty; Alexander Goesmann (PLoS Comput. Biol., 2020)

Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. - Yunxiao Ren; Trinad Chakraborty; Swapnil Doijad; Linda Falgenhauer; Jane Falgenhauer; Alexander Goesmann; Anne-Christin Hauschild; Oliver Schwengers; Dominik Heider (Bioinform., 2022)

How reliable is smartphone-based electronic contact tracing for COVID-19? - Philipp H. Kindt; Trinad Chakraborty; Samarjit Chakraborty (Commun. ACM, 2022)