Function Prediction of uncharacterized proteins. - Troy Hawkins; Daisuke Kihara (J. Bioinform. Comput. Biol., 2007)

ESG: extended similarity group method for automated protein function prediction. - Meghana Chitale; Troy Hawkins; Changsoon Park; Daisuke Kihara (Bioinform., 2009)

Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP. - Troy Hawkins; Meghana Chitale; Daisuke Kihara (BMC Bioinform., 2010)