A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae. - Kuang-Chi Chen; Tse-Yi Wang; Huei-Hun Tseng; Chi-Ying F. Huang; Cheng-Yan Kao (Bioinform., 2005)

Combining Agent-Based Models with Stochastic Differential Equations for Gene Regulatory Networks. - Tse-Yi Wang; Kuang-Chi Chen; D. Frank Hsu; Cheng-Yan Kao (BIBE, 2009)

Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency. - Francis C. Weng; Chien-Hao Su; Ming-Tsung Hsu; Tse-Yi Wang; Huai-Kuang Tsai; Daryi Wang (BMC Bioinform., 2010)

MetaABC - an integrated metagenomics platform for data adjustment, binning and clustering. - Chien-Hao Su; Ming-Tsung Hsu; Tse-Yi Wang; Sufeng Chiang; Jen-Hao Cheng; Francis C. Weng; Cheng-Yan Kao; Daryi Wang; Huai-Kuang Tsai (Bioinform., 2011)

MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions. - Tse-Yi Wang; Chien-Hao Su; Huai-Kuang Tsai (Bioinform., 2011)

A quantitative analysis of monochromaticity in genetic interaction networks. - Chien-Hsiang Hsu; Tse-Yi Wang; Hsueh-Ting Chu; Cheng-Yan Kao; Kuang-Chi Chen (BMC Bioinform., 2011)

The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes. - Chien-Hao Su; Tse-Yi Wang; Ming-Tsung Hsu; Francis Cheng-Hsuan Weng; Cheng-Yan Kao; Daryi Wang; Huai-Kuang Tsai (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Information fusion of CNVs and SNPs on gene-gene interactions for molecular subtypes of lymphoma. - Tse-Yi Wang; Yen-Ho Chen; Kuang-Chi Chen (ICCI*CC, 2013)

Enrichment Analysis of Biological Pathways and Protein Complexes in the PPI Network Associated with Heroin Use Disorder. - Tse-Yi Wang; Sheng-An Lee; Jen-Liang Cheng; Kuang-Chi Chen (ICCBB, 2023)