SCPortalen: human and mouse single-cell centric database. - Imad Abugessaisa; Shuhei Noguchi; Michael Böttcher; Akira Hasegawa; Tsukasa Kouno; Sachi Kato; Yuhki Tada; Hiroki Ura; Kuniya Abe; Jay W. Shin; Charles Plessy; Piero Carninci; et al. (Nucleic Acids Res., 2018)

SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells. - Jonathan Moody; Tsukasa Kouno; Jen-Chien Chang; Yoshinari Ando; Piero Carninci; Jay W. Shin; Chung-Chau Hon (Bioinform., 2022)