ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data. - Tsun-Po Yang; Ting-Yu Chang; Chi-Hung Lin; Ming-Ta Hsu; Hsei-Wei Wang (Bioinform., 2006)

easyExon - A Java-based GUI tool for processing and visualization of Affymetrix exon array data. - Ting-Yu Chang; Yin-Yi Li; Chih-Hung Jen; Tsun-Po Yang; Chi-Hung Lin; Ming-Ta Hsu; Hsei-Wei Wang (BMC Bioinform., 2008)

Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures. - Chih-Hung Jen; Tsun-Po Yang; Chien-Yi Tung; Shu-Han Su; Chi-Hung Lin; Ming-Ta Hsu; Hsei-Wei Wang (BMC Bioinform., 2008)

Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies. - Tsun-Po Yang; Claude Beazley; Stephen B. Montgomery; Antigone S. Dimas; Maria Gutierrez-Arcelus; Barbara E. Stranger; Panos Deloukas; Emmanouil T. Dermitzakis (Bioinform., 2010)

The evolutionary history of 2,658 cancers. - Moritz Gerstung; Clemency Jolly; Ignaty Leshchiner; Stefan C. Dentro; Santiago Gonzalez; Thomas J. Mitchell; Yulia Rubanova; Pavana Anur; Kaixian Yu; Maxime Tarabichi; Amit G. Deshwar; Jeff Wintersinger; et al. (Nat., 2020)

Cell type-specific dynamics of DNA replication timing in primary cancer whole-genome sequences - Tsun-Po Yang (2022)