YGMD: a repository for yeast cooperative transcription factor sets and their target gene modules. - Wei-Sheng Wu; Pin-Han Chen; Tsung-Te Chen; Yan Yuan Tseng (Database J. Biol. Databases Curation, 2017)

piRTarBase: a database of piRNA targeting sites and their roles in gene regulation. - Wei-Sheng Wu; Jordan S. Brown; Tsung-Te Chen; Yu-Han Chu; Wei-Che Huang; Shikui Tu; Heng-Chi Lee (Nucleic Acids Res., 2019)