Accurate identification of orthologous segments among multiple genomes. - Tsuyoshi Hachiya; Yasunori Osana; Kris Popendorf; Yasubumi Sakakibara (Bioinform., 2009)

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. - Toshiaki Namiki; Tsuyoshi Hachiya; Hideaki Tanaka; Yasubumi Sakakibara (BCB, 2011)

Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences. - Tomoya Tagami; Tsuyoshi Hachiya; Yasubumi Sakakibara (ICCABS, 2012)

COPICAT: a software system for predicting interactions between proteins and chemical compounds. - Yasubumi Sakakibara; Tsuyoshi Hachiya; Miho Uchida; Nobuyoshi Nagamine; Yohei Sugawara; Masahiro Yokota; Masaomi Nakamura; Kris Popendorf; Takashi Komori; Kengo Sato (Bioinform., 2012)

An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds. - Masaomi Nakamura; Tsuyoshi Hachiya; Yutaka Saito; Kengo Sato; Yasubumi Sakakibara (BMC Bioinform., 2012)

Retrospective observational study of a novel smartphone app on the management of patients with mild cognitive impairment or mild dementia. - Reo Hamaguchi; Yoshihiro Hirokawa; Hirotsugu Takahashi; Tsuyoshi Hachiya; Haruna Kawano; Shuji Isotani; Emi Ito; Nobuhiro Handa; Ryozo Saito; Shigeo Horie; Hisamitsu Ide (Frontiers Digit. Health, 2023)