FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets. - Bernard J. Pope; Tu Nguyen-Dumont; Fabrice Odefrey; Russell Bell; Sean V. Tavtigian; David E. Goldgar; Andrew Lonie; Melissa C. Southey; Daniel J. Park (BMC Bioinform., 2013)

Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database. - Daniel J. Park; Tu Nguyen-Dumont; Sori Kang; Karin Verspoor; Bernard J. Pope (Source Code Biol. Medicine, 2014)

ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets. - Bernard J. Pope; Tu Nguyen-Dumont; Fleur Hammet; Daniel J. Park (Source Code Biol. Medicine, 2014)

UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing. - Daniel J. Park; Roger Li; Edmund Lau; Peter Georgeson; Tu Nguyen-Dumont; Bernard J. Pope (BMC Bioinform., 2016)