Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data. - Jackson Nowotny; Sharif Ahmed; Lingfei Xu; Oluwatosin Oluwadare; Hannah Chen 002; Noelan Hensley; Tuan Trieu; Renzhi Cao; Jianlin Cheng (BMC Bioinform., 2015)

MOGEN: a tool for reconstructing 3D models of genomes from chromosomal conformation capturing data. - Tuan Trieu; Jianlin Cheng (Bioinform., 2016)

3D Genome Structure Modeling by Lorentzian Objective Function. - Tuan Trieu; Jianlin Cheng (BCB, 2017)

GenomeFlow: a comprehensive graphical tool for modeling and analyzing 3D genome structure. - Tuan Trieu; Oluwatosin Oluwadare; Julia Wopata; Jianlin Cheng (Bioinform., 2019)