CoPS: Comprehensive Peptide Signature Database. - Tulika Prakash; Mamta Khandelwal; Dipayan Dasgupta; Debasis Dash; Samir K. Brahmachari (Bioinform., 2004)

Recognition and analysis of protein-coding genes in severe acute respiratory syndrome associated coronavirus. - Ramakant Sharma; Jitendra Kumar Maheshwari; Tulika Prakash; Debasis Dash; Samir K. Brahmachari (Bioinform., 2004)

MetaBioME: a database to explore commercially useful enzymes in metagenomic datasets. - Vineet K. Sharma; Naveen Kumar 010; Tulika Prakash; Todd D. Taylor (Nucleic Acids Res., 2010)

Functional assignment of metagenomic data: challenges and applications. - Tulika Prakash; Todd D. Taylor (Briefings Bioinform., 2012)