An improved image coding algorithm using morphological operator theory. - Tun-Wen Pai; John H. L. Hansen (ICASSP, 1991)

Morphological skeletonization for medical image compression. - Tun-Wen Pai; John H. L. Hansen (CBMS, 1992)

Boundary-Constrained Morphological Skeleton Minimization and Skeleton Reconstruction. - Tun-Wen Pai; John H. L. Hansen (IEEE Trans. Pattern Anal. Mach. Intell., 1994)

An intelligent Chinese official document processing system. - Tun-Wen Pai; Tieh-Ming Wu; Gan-How Chang; Pei-Yih Ting (ICDAR, 1995)

Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences. - Tun-Wen Pai; Margaret Dah-Tsyr Chang; Jia-Han Chu; Wei-Yuan Chang; Hsiu Ling Tai (APBC, 2004)

Unique peptide prediction of RNase family sequences based on reinforced merging algorithms. - Hao-Teng Chang; Tan-Chi Fan; Margaret Dah-Tsyr Chang; Tun-Wen Pai; Bo-Han Su; Pei-Chih Wu (APBC, 2005)

Grouping and Interactive Learning Mechanism for Mathematics Learning Programs. - Po-How Chang; Tun-Wen Pai; Lee-Jyi Wang (ICALT, 2005)

Dnamic contrast enhancement based on histogram specification. - Chi-Chia Sun; Shanq-Jang Ruan; Mon-Chau Shie; Tun-Wen Pai (IEEE Trans. Consumer Electron., 2005)

A reinforced merging methodology for mapping unique peptide motifs in members of protein families. - Hao-Teng Chang; Tun-Wen Pai; Tan-Chi Fan; Bo-Han Su; Pei-Chih Wu; Chuan Yi Tang; Chun-Tien Chang; Shi-Hwei Liu; Margaret Dah-Tsyr Chang (BMC Bioinform., 2006)

Methods for path and service planning under route constraints. - Chao-Lin Liu; Tun-Wen Pai (Int. J. Comput. Appl. Technol., 2006)

Unique Peptide Identification of Rnasea Superfamily Sequences Based on Reinforced Merging Algorithms. - Tun-Wen Pai; Bo-Han Su; Pei-Chih Wu; Margaret Dah-Tsyr Chang; Hao-Teng Chang; Tan-Chi Fan; Shi-Hwei Liu (J. Bioinform. Comput. Biol., 2006)

REMUS: a tool for identification of unique peptide segments as epitopes. - Tun-Wen Pai; Margaret Dah-Tsyr Chang; Wen-Shyong Tzou; Bo-Han Su; Pei-Chih Wu; Hao-Teng Chang; Wei-I Chou (Nucleic Acids Res., 2006)

A Database for Prediction of Unique Peptide Motifs as Linear Epitopes. - Margaret Dah-Tsyr Chang; Hao-Teng Chang; Rong-Yuan Huang; Wen-Shyong Tzou; Chih-Hong Liu; Wei-Jun Zhung; Hsien-Wei Wang; Chun-Tien Chang; Tun-Wen Pai (ISBRA, 2007)

An SSR Comparative Genomics Database and Its Applications. - Tun-Wen Pai; Meng-Chang Hsiao; Chien-Ming Chen; Wen-Shyong Tzou; Ron-Shan Chen (CISIS, 2008)

Identification of Conserved Simple Sequence Repeats from Orthologous Disease Genes. - Chien-Ming Chen; Wen-Shyong Tzou; Tsan-Huang Shih; Chih-Chia Chen; Chin-Hua Hu; Tun-Wen Pai (BIOCOMP, 2009)

IRIS: Internal Repeat Identification System. - Hua-Ying Kao; Wen-Shyong Tzou; Yen-Chu Hsu; Chien-Ming Chen; Tun-Wen Pai (BIOCOMP, 2009)

A Database of Selected Marine Genomics for Retrieving Distantly Related Proteins. - Tsan-Huang Shih; Yen-Chu Hsu; Tun-Wen Pai; Wen-Shyong Tzou; Chin-Hua Hu (BMEI, 2009)

B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics. - Wei-Kuo Wu; Wei-Chun Chung; Hao-Teng Chang; Ron-Shan Cheng; Tun-Wen Pai (CISIS, 2009)

Length Encoded Secondary Structure Profile for Remote Homologous Protein Detection. - Yen-Chu Hsu; Chien-Ming Chen; Tun-Wen Pai; Jyh-Fu Jeng; Chin-Hua Hu; Wen-Shyong Tzou (ICA3PP, 2009)

Prediction of Regulatory Molecules for Enhancement of EGFR Overexpression Triggered by Signal Peptide of Ribonuclease 3. - Hao-Teng Chang; Chung-Hsiao Chao; Yu-Fong Lin; Louis J. Tseng; Tun-Wen Pai; Tsan-Huang Shih; Margaret Dah-Tsyr Chang; Pei-Wen Tsai (CISIS, 2010)

A Comprehensive System for Identifying Internal Repeat Substructures of Proteins. - Hua-Ying Kao; Tsan-Huang Shih; Tun-Wen Pai; Ming-Da Lu; Hui-Huang Hsu (CISIS, 2010)

Using Solid Angles to Detect Protein Docking Regions by CUDA Parallel Algorithms. - Ying-Tsang Lo; Yueh-Lin Tsai; Hsin-Wei Wang; Yu-Ping Hsu; Tun-Wen Pai (ISPA, 2010)

Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules. - Wei-Yao Chou; Wei-I Chou; Tun-Wen Pai; Shu-Chuan Lin; Ting-Ying Jiang; Chuan Yi Tang; Margaret Dah-Tsyr Chang (Bioinform., 2010)

Inhibition of the interactions between eosinophil cationic protein and airway epithelial cells by traditional Chinese herbs. - Hao-Teng Chang; Louis J. Tseng; Ta-Jen Hung; Blacky T. Kao; Wei-Yong Lin; Tan-Chi Fan; Margaret Dah-Tsyr Chang; Tun-Wen Pai (BMC Syst. Biol., 2010)

Efficient algorithms for identifying orthologous simple sequence repeats of disease genes. - Chien-Ming Chen; Chih-Chia Chen; Tsan-Huang Shih; Tun-Wen Pai; Chin-Hua Hu; Wen-Shyong Tzou (J. Syst. Sci. Complex., 2010)

An Atomatic Fundus Image Analysis System for Clinical Diagnosis of Glaucoma. - Chih-Yin Ho; Tun-Wen Pai; Hao-Teng Chang; Hsin-Yi Chen (CISIS, 2011)

Multiscale SSR Tag Cloud Visualization for Biomarker Discovery. - Jhen-Li Huang; Chien-Ming Chen; Tun-Wen Pai; Liang Wei Zeng; Ron-Shan Cheng (CISIS, 2011)

A Hybrid Method of Propensity Scales and Support Vector Machine in a Linear Epitope Prediction. - Hsin-Wei Wang; Ya-Chi Lin; Tun-Wen Pai; Pei-Wen Tsai; Hao-Teng Chang (CISIS, 2011)

Poster: Linear B-cell epitope prediction based on Support Vector Machine and propensity scales. - Hsien-Wei Wang; Ya-Chi Lin; Tun-Wen Pai; Hao-Teng Chang (ICCABS, 2011)

Poster: Identification and classification of internal repeats in proteins. - Cing-Han Yang; Hsin-Wei Wang; Tsan-Huang Shih; Tun-Wen Pai (ICCABS, 2011)

Functional pathway mapping analysis for hypoxia-inducible factors. - Chia-Sheng Chuang; Tun-Wen Pai; Chin-Hua Hu; Wen-Shyong Tzou; Margaret Dah-Tsyr Chang; Hao-Teng Chang; Chih-Chia Chen (BMC Syst. Biol., 2011)

Ultrasonography Image Analysis for Detection and Classification of Chronic Kidney Disease. - Chih-Yin Ho; Tun-Wen Pai; Yuan-Chi Peng; Chien-Hung Lee; Yung-Chih Chen; Yang-Ting Chen; Kuo-Su Chen (CISIS, 2012)

Molecular Identification of a Unique Heparin Binding Motif Derived from Human RNase3. - Ping-Hsueh Kuo; Chien-Jung Chen; Pei-Chun Lien; Hsiu-Hui Chang; Shun-lung Fang; Margaret Dah-Tsyr Chang; Tun-Wen Pai (CISIS, 2012)

In Silico Prediction and In Vitro Characterization of Unique Function of Human RNase3. - Pei-Chun Lien; Chien-Jung Chen; Ping-Hsueh Kuo; Tun-Wen Pai; Hsiu-Hui Chang; Yiu-Kay Lai; Wei-Shuo Wu; Margaret Dah-Tsyr Chang (CISIS, 2012)

RNA-seq coverage effects on biological pathways and GO tag clouds. - Chien-Ming Chen; Tsan-Huang Shih; Tun-Wen Pai; Zhen-Long Liu; Margaret Dah-Tsyr Chang (ISB, 2012)

Construction of a Taiwan Biodiversity Genetic Database in Cloud Environments. - Han-Yu Lin; Chien-Ming Chen; Yu-Lun Cheng; Ya-Hui Chang; Tun-Wen Pai (ISBAST, 2012)

Chemoattraction of macrophages by secretory molecules derived from cells expressing the signal peptide of eosinophil cationic protein. - Yushu Liu; Pei-Wen Tsai; Yong Wang; Tan-Chi Fan; Chia-Hung Hsieh; Margaret Dah-Tsyr Chang; Tun-Wen Pai; Chien-Fu Huang; Chung-Yu Lan; Hao-Teng Chang (BMC Syst. Biol., 2012)

Discovering Feedback and Coupled Feedback Loops in KEGG Pathways through Cross-Map Identification. - Chen-Lung Liu; Chien-Ming Chen; Hui-Huang Hsu; Tun-Wen Pai (CISIS, 2013)

Mining Polymorphic SSRs from Individual Genome Sequences. - Yu-Lun Lu; Chien-Ming Chen; Tun-Wen Pai; Hao-Teng Chang (CISIS, 2013)

Prediction of conformational epitopes with the use of a knowledge-based energy function and geometrically related neighboring residue characteristics. - Ying-Tsang Lo; Tun-Wen Pai; Wei-Kuo Wu; Hao-Teng Chang (BMC Bioinform., 2013)

Protein-ligand binding region prediction (PLB-SAVE) based on geometric features and CUDA acceleration. - Ying-Tsang Lo; Hsin-Wei Wang; Tun-Wen Pai; Wen-Shyong Tzou; Hui-Huang Hsu; Hao-Teng Chang (BMC Bioinform., 2013)

Protein crystallization prediction with AdaBoost. - Cheng-Wei Hsieh; Hui-Huang Hsu; Tun-Wen Pai (Int. J. Data Min. Bioinform., 2013)

Homologous synteny Block Detection Based on Suffix Tree Algorithms. - Yu-Lun Chen; Chien-Ming Chen; Tun-Wen Pai; Hon-Wai Leong; Ket Fah Chong (J. Bioinform. Comput. Biol., 2013)

Transcriptome Data Visualization in Pathways with Application to Zebrafish Embryo Datasets. - Chien-Ming Chen; Kuan Jung Lai; Tun-Wen Pai; Hao-Teng Chang (CISIS, 2014)

Epitope and Paratope Region Analysis. - Ying-Tsang Lo; Tun-Wen Pai; Hui-Huang Hsu; Huai Kuang Tsai (CISIS, 2014)

Stage diagnosis for Chronic Kidney Disease based on ultrasonography. - Chi-Jim Chen; Tun-Wen Pai; Hamido Fujita; Chien-Hung Lee; Yang-Ting Chen; Kuo-Su Chen; Yung-Chih Chen (FSKD, 2014)

Transcriptome analysis of Orange-Spotted Grouper between Ranavirus and Megalocytivirus Infections. - Cing-Han Yang; Yu-Cheng Hsiao; Chien-Ming Chen; Tun-Wen Pai; Ming-Hung Wu; Hsin-Yiu Chou (ICS, 2014)

Smartphone Indoor Localization with Accelerometer and Gyroscope. - Hui-Huang Hsu; Wei-Jan Peng; Timothy K. Shih; Tun-Wen Pai; Ka Lok Man (NBiS, 2014)

Epitope Prediction Based on Geometric Spiral Features of Neighboring Surface Residues. - Ying-Tsang Lo; Hamido Fujita; Tun-Wen Pai (SoMeT, 2014)

A local average distance descriptor for flexible protein structure comparison. - Hsin-Wei Wang; Chia-Han Chu; Wen-Ching Wang; Tun-Wen Pai (BMC Bioinform., 2014)

Identifying significant associations of orthologous simple sequence repeats with gene ontologies. - Chien-Ming Chen; Tun-Wen Pai; Chia-Sheng Chuang; Jhen-Li Huang; Wen-Shyong Tzou; Chin-Hua Hu (Int. J. Data Min. Bioinform., 2014)

Stochastic Simulation of Notch Signaling Reveals Novel Factors That Mediate the Differentiation of Neural Stem Cells. - Wen-Shyong Tzou; Ying-Tsang Lo; Tun-Wen Pai; Chin-Hua Hu; Chung-Hao Li (J. Comput. Biol., 2014)

Exclusive Genomic Pathway Analysis for Groupers Infected by Different Iridovirus. - Chun-Cheng Liu; Chien-Ming Chen; Tun-Wen Pai; Hsin-Yiu Chou; Hui-Huang Hsu (CISIS, 2015)

An automatic structural detection system for alpha-solenoid repeats. - Hung-Yi Cheng; Tun-Wen Pai; Hamido Fujita (ICSSE, 2015)

A prediction system for ankyrin repeat domain family. - Teng-Wei Wang; Ying-Tsang Lo; Tun-Wen Pai; Hamido Fujita (ICSSE, 2015)

A Support Vector Machine Approach for Truncated Fingerprint Image Detection from Sweeping Fingerprint Sensors. - Chi-Jim Chen; Tun-Wen Pai; Mox Cheng (Sensors, 2015)

Gene Ontology Based Clustering Analysis for Functionally Linked Genes and Cross-Species Comparison for SSR Biomarkers. - Yang-Chun Chang; Chien-Ming Chen; Tun-Wen Pai; Ron-Shan Cheng; Ming-Hsiung Chiu (CISIS, 2016)

Biological Pathway Analysis for De Novo Transcriptomes through Multiple Reference Species Selections. - Chun-Cheng Liu; Chien-Ming Chen; Cin-Han Yang; Tun-Wen Pai; Phaik-Eem Lim; Siew-Moi Phang; Sze-Wan Poong; Kok-Keong Lee (CISIS, 2016)

A Conformational Epitope Prediction System Based on Sequence and Structural Characteristics. - Wan-Li Chang; Ying-Tsang Lo; Tun-Wen Pai (IEA/AIE, 2016)

Feature analysis on heart failure classes and associated medications. - Chi-Jim Chen; Ying-Tsang Lo; Jhen-Li Huang; Tun-Wen Pai; Min-Hui Liu; Chao-Hung Wang (SMC, 2016)

Proactive healthcare and an early warning mechanism for coronary artery disease patients using Internet-of-Thing devices. - Shao-Jie Hsu; Shih-Syun Lin; Tun-Wen Pai; Hamido Fujita (SMC, 2016)

Construction of a Metadata Schema for Medical Data in Networking Applications. - Chi-Jane Chen; Tun-Wen Pai; Jhen-Li Huang; Ying-Tsang Lo; Shih-Syun Lin; Chun-Chao Yeh (AINA Workshops, 2017)

Autonomous exercise rehabilitation for heart failure patients based on six-minute walk test through Internet-of-Thing devices. - Shao-Jie Hsu; Shih-Syun Lin; Tun-Wen Pai; Chao-Hung Wang; Min-Hui Liu; Chi-Hsin Lee (SMC, 2017)

Data Based Feature Identification of Polymorphic Functional Marker from Transcriptome Comparison. - Cin-Han Yang; Tun-Wen Pai; Ron-Shan Chen; Hsin-Yiu Chou (SoMeT, 2017)

Functional Simple Sequence Repeat (SSR) Biomarkers for Specific Gene Groups of Oreochromis Niloticus. - Tun-Wen Pai; Yang-Chun Chang; Cing-Han Yang; Ron-Shan Chen; Rong-Hwa Chen (ICBBS, 2018)

Indoor localization and navigation using smartphone sensory data. - Hui-Huang Hsu; Jung-Kuei Chang; Wei-Jan Peng; Timothy K. Shih; Tun-Wen Pai; Ka Lok Man (Ann. Oper. Res., 2018)

Multiple model species selection for transcriptomics analysis of non-model organisms. - Tun-Wen Pai; Kuan-Hung Li; Cing-Han Yang; Chin-Hwa Hu; Han-Jia Lin; Wen-Der Wang; Yet-Ran Chen (BMC Bioinform., 2018)

Functional enrichment analysis based on long noncoding RNA associations. - Kuo-Sheng Hung; Chung-Chi Hsiao; Tun-Wen Pai; Chin-Hwa Hu; Wen-Shyong Tzou; Wen-Der Wang; Yet-Ran Chen (BMC Syst. Biol., 2018)

A voting mechanism-based linear epitope prediction system for the host-specific Iridoviridae family. - Tao-Chuan Shih; Li-Ping Ho; Jen-Leih Wu; Hsin-Yiu Chou; Tun-Wen Pai (BMC Bioinform., 2019)

Automatic generation of puzzle tile maps for spatial-temporal data visualization. - Shih-Syun Lin; Juo-Yu Yang; Huang-Sin Syu; Chao-Hung Lin; Tun-Wen Pai (Comput. Graph., 2019)

Prediction of patients with heart failure after myocardial infarction. - Po-Yu Liang; Lee-Jyi Wang; Yang-Sheng Wu; Tun-Wen Pai; Chao-Hung Wang; Min-Hui Liu (BIBM, 2020)

Computing a Weighted Jaccard Index of Electronic Medical Record for Disease Prediction. - Chia-Hui Huang; Yun-Te Liao; David Taniar; Tun-Wen Pai (IEA/AIE, 2020)

Enhanced Functional Pathway Annotations for Differentially Expressed Gene Clusters. - Chun-Cheng Liu; Tao-Chuan Shih; Tun-Wen Pai; Chin-Hwa Hu; Lee-Jyi Wang (ISBRA, 2020)

Prediction of chronic kidney disease stages by renal ultrasound imaging. - Chi-Jim Chen; Tun-Wen Pai; Hui-Huang Hsu; Chien-Hung Lee; Kuo-Su Chen; Yung-Chih Chen (Enterp. Inf. Syst., 2020)

Patient Oriented Readability Assessment for Heart Disease Healthcare Documents. - Hui-Huang Hsu; Yu-Sheng Chen; Chuan-Jie Lin; Tun-Wen Pai (Int. J. Data Warehous. Min., 2020)

Using machine learning approach to predict short-term mortality risk of acute myocardial infarction after emergency admission. - Po-Cheng Peng; Hsu-Chun Chien; Prasenjit Mitra; Tun-Wen Pai; Chao-Hung Wang; Min-Hui Liu (BIBM, 2021)

MELEPS: Multiple Expert Linear Epitope Prediction System. - An-Chi Shau; Nai-Shuan Hwang; Shu-Yu Chang; Hsin-Yiu Chou; Tun-Wen Pai (ICCABS, 2021)

Comorbidity Trajectory Network in Heart Failure Patients Based on Prefixspan Algorithm. - Jhen-Li Huang; Yu-Chun Yen; Vaibhav Kumar Sunkaria; Tun-Wen Pai (ICMHI, 2021)

Identification of fish species through tRNA-based primer design. - Ting-Hui Wu; Cing-Han Yang; Tun-Wen Pai; Li-Ping Ho; Jen-Leih Wu; Hsin-Yiu Chou (BMC Bioinform., 2021)

Enhanced Over-Representation Analysis for the Differential Regulation of Birc5a and HIF2α-Knockdown Approaches. - Chun-Cheng Liu; Tao-Chuan Shih; Tun-Wen Pai; Chin-Hwa Hu; Wen-Shyong Tzou (J. Comput. Biol., 2021)

Detection of Novel Gene Biomarkers in non-small cell lung cancer using integrated approaches in DNA methylation expression. - Tun-Wen Pai (ICBBS, 2022)

Speech Emotion Recognition by using Philips Fingerprint and Spectral Entropy. - Xuan Cao; Maoshen Jia; Lu Li; Tun-Wen Pai (ICCAI, 2022)

Intelligent Medical Interactive Educational System for Cardiovascular Disease. - Shengshan Chen; Hou-Tsan Lee; Tun-Wen Pai; Chao-Hung Wang (IEA/AIE, 2022)

Intelligent DNA methylation biomarker selection for colorectal cancer. - Yi-Hsuan Tsai; Lucy Yi-Hsuan Lai; Yun-Te Liao; Shu-Jen Chen; Tun-Wen Pai; Margaret Dah-Tsyr Chang (SMC, 2022)

Cross-corpus speech emotion recognition using subspace learning and domain adaption. - Xuan Cao; Maoshen Jia; Jiawei Ru; Tun-Wen Pai (EURASIP J. Audio Speech Music. Process., 2022)

Enhancing Cyber Threat Intelligence with Named Entity Recognition Using BERT-CRF. - Shengshan Chen; Ren-Hung Hwang; Chin-Yu Sun; Ying-Dar Lin; Tun-Wen Pai (GLOBECOM, 2023)

PepTracR: a Centralized Database for Pathogen Peptides and Neoepitopes based on 3D Structures information and Similarity-search in T-cell Immunotherapy Research. - Tao-Chuan Shih; Cing-Han Yang; Ying-Ja Chen; Li-Tzu Yeh; Chi-Wei Lu; Tun-Wen Pai (ICBBS, 2023)

Applying the Diamond Model of Intrusion Analysis with Generative Pre-trained Transformer 3. - Shengshan Chen; Tun-Wen Pai; Chin-Yu Sun (ICCE-Taiwan, 2023)

Using Machine Learning for Efficient Smishing Detection. - Shengshan Chen; Chin-Yu Sun; Tun-Wen Pai (ICCE-Taiwan, 2023)

Intelligent Behavior Recognition based on Gyroscope and Accelerometer. - Pin-Yu Huang; Yung-Han Lu; Chun-Ting Lin; Bo-Xian He; Tun-Wen Pai (ICCE-Taiwan, 2023)

Enhancing Small Tabular Clinical Trial Dataset through Hybrid Data Augmentation: Combining SMOTE and WCGAN-GP. - Winston Wang; Tun-Wen Pai (Data, 2023)

Separation of Multiple Speech Sources in Reverberant Environments Based on Sparse Component Enhancement. - Lu Li; Maoshen Jia; Jinxiang Liu; Tun-Wen Pai (Circuits Syst. Signal Process., 2023)

Discovering Effective DNA Methylation Biomarkers through Different Gene Mutation Groups for Lung Cancer Detection. - Huan-Zhi Lin; Shi-Yan Huang; Tun-Wen Pai; Margaret Dah-Tsyr Chang; Lucy Yi-Hsuan Lai (ICCBB, 2024)

Analysis of DNA Methylation Biomarkers through Liquid Biopsies for Early Breast Cancer Detection. - Xiang-Zhen Chen; Chia-Yun Ou; Geng-Hong Hsiao; Hui-Wu Zhang; Tun-Wen Pai; Mee-Hoong See (ICS, 2024)

Improving quality of indicators of compromise using STIX graphs. - Shengshan Chen; Ren-Hung Hwang; Asad Ali; Ying-Dar Lin; Yu-Chih Wei; Tun-Wen Pai (Comput. Secur., 2024)

DNA methylation biomarker analysis from low-survival-rate cancers based on genetic functional approaches. - Yi-Hsuan Tsai; Prasenjit Mitra; David Taniar; Tun-Wen Pai (Frontiers Bioinform., 2025)