Modelling of calcium dynamics in brain energy metabolism and Alzheimer's disease. - S. Tiveci; Ata Akin; Tunahan Çakir; H. Saybasili; Kutlu Ö. Ülgen (Comput. Biol. Chem., 2005)

Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches. - Saliha Durmus Tekir; Tunahan Çakir; Kutlu Ö. Ülgen (Comput. Biol. Chem., 2006)

Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae. - Tunahan Çakir; Betül Kirdar; Z. Ilsen Önsan; Kutlu Ö. Ülgen; Jens Nielsen (BMC Syst. Biol., 2007)

PHISTO: pathogen-host interaction search tool. - Saliha Durmus Tekir; Tunahan Çakir; Emre Ardiç; Ali Semih Sayilirbas; Gökhan Konuk; Mithat Konuk; Hasret Sariyer; Azat Ugurlu; Ilknur Karadeniz; Arzucan Özgür; Fatih Erdogan Sevilgen; Kutlu Ö. Ülgen (Bioinform., 2013)

A network-based drug prioritization and combination analysis for the MEK5/ERK5 pathway in breast cancer. - Regan Odongo; Asuman Demiroglu-Zergeroglu; Tunahan Çakir (BioData Min., 2024)

Effect of RNA-Seq data normalization on protein interactome mapping for Alzheimer's disease. - Elif Düz; Tunahan Çakir (Comput. Biol. Chem., 2024)