Cooperative Transition between Open and Closed Conformations in Potassium Channels. - Turkan Haliloglu; Nir Ben-Tal (PLoS Comput. Biol., 2008)

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues. - Pemra Ozbek; Seren Soner; Burak Erman; Turkan Haliloglu (Nucleic Acids Res., 2010)

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. - Gilad Wainreb; Haim Ashkenazy; Yana Bromberg; Alina Starovolsky-Shitrit; Turkan Haliloglu; Eytan Ruppin; Karen B. Avraham; Burkhard Rost; Nir Ben-Tal (Nucleic Acids Res., 2010)

Predicting Important Residues and Interaction Pathways in Proteins Using Gaussian Network Model: Binding and Stability of HLA Proteins. - Turkan Haliloglu; Ahmet Gül; Burak Erman (PLoS Comput. Biol., 2010)

A Mechanistic View of the Role of E3 in Sumoylation. - Melda Tozluoglu; Ezgi Karaca; Ruth Nussinov; Türkan Haliloglu (PLoS Comput. Biol., 2010)

Monte Carlo simulations of peptide-membrane interactions with the MCPep web server. - Yana Gofman; Turkan Haliloglu; Nir Ben-Tal (Nucleic Acids Res., 2012)

Conformational Control of the Binding of the Transactivation Domain of the MLL Protein and c-Myb to the KIX Domain of CREB. - Elif Nihal Korkmaz; Ruth Nussinov; Türkan Haliloglu (PLoS Comput. Biol., 2012)

MCPath: Monte Carlo path generation approach to predict likely allosteric pathways and functional residues. - Cihan Kaya; Andac Armutlulu; Sölen Ekesan; Turkan Haliloglu (Nucleic Acids Res., 2013)

Dynamic Fluctuations Provide the Basis of a Conformational Switch Mechanism in Apo Cyclic AMP Receptor Protein. - Burcu Aykaç Fas; Yusuf Tutar; Türkan Haliloglu (PLoS Comput. Biol., 2013)

MIMTool: A Tool for Drawing Molecular Interaction Maps. - Mine Edes; Can C. Özturan; Türkan Haliloglu; Augustin Luna; Ruth Nussinov (CoRR, 2014)

Structure, Dynamics and Implied Gating Mechanism of a Human Cyclic Nucleotide-Gated Channel. - Yana Gofman; Charlotta Schärfe; Debora S. Marks; Turkan Haliloglu; Nir Ben-Tal (PLoS Comput. Biol., 2014)

DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics. - Seren Soner; Pemra Ozbek; José Ignacio Garzón; Nir Ben-Tal; Turkan Haliloglu (PLoS Comput. Biol., 2015)

Local and Global Motions Underlying Antibiotic Binding in Bacterial Ribosome. - Ozge Kurkcuoglu; M. Unal Gunes; Turkan Haliloglu (J. Chem. Inf. Model., 2020)

Prediction of allosteric communication pathways in proteins. - Turkan Haliloglu; Aysima Hacisuleyman; Burak Erman (Bioinform., 2022)

Dynamic correlations: exact and approximate methods for mutual information. - Kemal Demirtas; Burak Erman; Türkan Haliloglu (Bioinform., 2024)