Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

Statistical inference in ensemble modeling of cellular metabolism. - Tuure Hameri; Marc-Olivier Boldi; Vassily Hatzimanikatis (PLoS Comput. Biol., 2019)

The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli. - Tuure Hameri; Georgios Fengos; Vassily Hatzimanikatis (BMC Bioinform., 2021)