U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings. - Bichar Dip Shrestha Gurung; Ramesh Devadig; Tuyen Do; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2022)

Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. - Sam Haas; Timothy W. Hartman; Bichar Dip Shrestha Gurung; Tuyen Do; Rajesh Kumar Sani; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2022)

Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model. - Tuyen Do; Bichar Dip Shrestha Gurung; Shiva Aryal; Anup Khanal; Sandeep Chataut; Venkataramana Gadhamshetty; Carol Lushbough; Etienne Z. Gnimpieba (BIBM, 2023)

Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. - Bichar Dip Shrestha Gurung; Anup Khanal; Timothy W. Hartman; Tuyen Do; Sandeep Chataut; Carol Lushbough; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2023)

SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning. - Sam Haas; Bichar Dip Shrestha Gurung; Timothy W. Hartman; Tuyen Do; Etienne Z. Gnimpieba (BIBM, 2023)

Toward Fine-Tuning Large Language Models in Ontology of Microbial Phenotypes Construction. - Anushuya Baidya; Tuyen Do; Etienne Z. Gnimpieba (BIBM, 2024)

NFB-Checker: An AI/ML-Powered Microorganism Nitrogen Fixation Susceptibility Prediction from Gene Collection. - Tuyen Do; Shiva Aryal; Bichar Dip Shrestha Gurung; Diing D. M. Agany; Nick Klein; Ruanbao Zhou; Rajesh Kumar Sani; Etienne Z. Gnimpieba (BIBM, 2024)

Applying the DeepSeqDock Harmonization Framework on Pseudomonas Aeruginosa Bacterial Biofilm Data. - Corey Zhao; Bichar Dip Shrestha Gurung; Timothy W. Hartman; Tuyen Do; Mariah M. Hoffman; Etienne Z. Gnimpieba (BIBM, 2024)

Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities. - Etienne Z. Gnimpieba; Timothy W. Hartman; Tuyen Do; Jessica Zylla; Shiva Aryal; Samuel J. Haas; Diing D. M. Agany; Bichar Dip Shrestha Gurung; Valena Doe; Zelaikha B. Yosufzai; Daniel Pan; Ross Campbell; et al. (Briefings Bioinform., 2024)

Comparative Study of Domain Driven Terms Extraction Using Large Language Models. - Sandeep Chataut; Tuyen Do; Bichar Dip Shrestha Gurung; Shiva Aryal; Anup Khanal; Carol Lushbough; Etienne Z. Gnimpieba (CoRR, 2024)

Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery. - Shiva Aryal; Tuyen Do; Bisesh Heyojoo; Sandeep Chataut; Bichar Dip Shrestha Gurung; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (CoRR, 2024)