Update of ASRP: the Arabidopsis Small RNA Project database. - Tyler W. H. Backman; Christopher M. Sullivan; Jason S. Cumbie; Zachary A. Miller; Elisabeth J. Chapman; Noah Fahlgren; Scott A. Givan; James C. Carrington; Kristin D. Kasschau (Nucleic Acids Res., 2008)

ChemMine tools: an online service for analyzing and clustering small molecules. - Tyler W. H. Backman; Yiqun Cao; Thomas Girke (Nucleic Acids Res., 2011)

fmcsR: mismatch tolerant maximum common substructure searching in R. - Yan Wang; Tyler W. H. Backman; Kevin Horan; Thomas Girke (Bioinform., 2013)

systemPipeR: NGS workflow and report generation environment. - Tyler W. H. Backman; Thomas Girke (BMC Bioinform., 2016)

bioassayR: Cross-Target Analysis of Small Molecule Bioactivity. - Tyler W. H. Backman; Thomas Girke (J. Chem. Inf. Model., 2016)

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. - Garrett W. Birkel; Amit Ghosh; Vinay Satish Kumar; Daniel Weaver; David Ando; Tyler W. H. Backman; Adam P. Arkin; Jay D. Keasling; Héctor García Martín (BMC Bioinform., 2017)

Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. - Garrett W. Birkel; Amit Ghosh; Vinay Satish Kumar; Daniel Weaver; David Ando; Tyler W. H. Backman; Adam P. Arkin; Jay D. Keasling; Héctor García Martín (BMC Bioinform., 2017)

ClusterCAD: a computational platform for type I modular polyketide synthase design. - Clara H. Eng; Tyler W. H. Backman; Constance B. Bailey; Christophe N. Magnan; Héctor García Martín; Leonard Katz; Pierre Baldi; Jay D. Keasling (Nucleic Acids Res., 2018)

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design. - Xavier B. Tao; Sarah Lafrance; Yifei Xing 001; Alberto A Nava; Héctor García Martín; Jay D. Keasling; Tyler W. H. Backman (Nucleic Acids Res., 2023)

BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale. - Tyler W. H. Backman; Christina Schenk; Tijana Radivojevic; David Ando; Jahnavi Singh; Jeffrey J. Czajka; Zak Costello; Jay D. Keasling; Yinjie Tang; Elena V. Akhmatskaya; Héctor García Martín (PLoS Comput. Biol., 2023)